Detail



ID : Ahg932623

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|932623|scaffold_400611.1
Sequence
GTAAAAACCC TAAACCAAAT CAATGGCCTT TAGGAGATTG TCGAAATCTG CTGCGGCAGC GATCAAGGCA CACAATATTT TTTATAGGCC ATCCCTCCTC CCTTCTGGCG CTATCTCTGC CTCTGCACAC TTGAGCTTGA TTTCCTCTCC TAATTCACTT TTTTCCCGGC CAAATTCCTT CATCGGAGTT TCATTAAACA GCTTCTCTTC GGTTACTAAA GCCACAGCTC ATGGCCAACT GTTCTCTATT TCTTTTCAGT TCCCTTCTTC GCGATGTTTC TCAGATACCG CAGCTAAGGA GAAAGTTGAG AATGAAGCAC TTGCAAAGTA TGGAAATGAT TTAACTGAGA TCGCTAGACA AGGAAAACTA CGTCCTGTGA TCAGACGGAA TGATGAAATT CGGAGTTGCA TCCAAATACT ATGCAGGATG ACAAAAAGCA ATCCTATTAT CGTTGGTGAA CCAGGTGTAG GAAAAACTGC TATTGCAGAA GGGTTGGCGG AGCGAATTGT ACGACGGGAT GTCCCAGAAC CTCTCTTGAA TCGGAAGTTG ATATCTCTCG ACATGAGTTC GTTGCTTGCT GGTGCCGTAT ATACAGGAGA GTTTGCGGGA AGGCTGAACG CAATACTGAA GGAAGTAATT GCTTCTAATG GGCAGATAAT CTTGTTCATA GATGAAATCC ACTCTCTTGT TCGTCAAGCG TCTAGTCGTG GAGACCTCTT GAAACCAATG CTTGGAAAAG GTGAACTGCG ATGCATTGGT GCAACTACGC AGACTGAATA CCGCGAATAC ATAGAAGACG ATCCAGCTTT GGCACGTAGG TTTCAGAAAG TGTTATGTGA TCAACCATCT GTTGAAAATA CCATCTCGAT TCTTCGTGGG TTAAGAGAGC GGTACGAGTT ACACCATGGT GTTAAGATAT CAGATGGTTC CCTTGTTTCA GCAGCGGTTT TGGCAGACCG CTACATCACT GAACGTTTTT TGCCAGATAA AGCTATTGAT CTTGTTGATG AAGCTGCTGC AAAGCTGAAG ATAGAGATCA CTACTAAACC AACAGAAATC GATGAAATAG ACAGAGATGT GACCACACTA GAGATGGAAA AGCTTTCTTT GAAAAAGGAT AGTGATAAAG CTTCTAAAGA ACGGCTAAAG AAGATTGAGA ATGATTTGAC CACACTCAAG GATAAACAAA AGAAATTTAG TAAGCTATTG GAAGAAGAAA AGTTTCTAAT TACTAAAATA CGTTCATTTA AAGAAGAGAT CGATGGAGTG AACCAGGAAA TTGTATCAGC TGTATGTGAA TCTGATCAAA ACCGTGTTGA TGATCTTAAG TATGGAACAC TTACGTCCCT CGAACGCCAG TTAGAAGAAG CTGAGAAGAA TCTCATGAAT TTCCGAGAGT CTCACCAGTC GCTAGTACGA GAAGAGTTAA CAGATCGTGA CATAGCATCA ATAGTAAGCA AGAAGACTGG TATTCCACAA TCAAATCTTC AGAAATCAGA GAGAGAAAAG CTGGTCATGT TGGATCAAGT GCTCCATGAG AGAATTGTTG GTCAAGACAT GGCTGTAGAA TTAGTTGCAG ATGCTATCCG TTGTTCGAAG GCTGGTCTTT CTGATCCTAA CCGACCTATA GCCAGTTTTA TGTTCATGGG TCCAACAGGT GTTGGTAAGA CCGAACTTGC CAAGGCTCTA GCTGGATACC TTTTCAACAA TGAAAATGCA ATAGTGAGGA TTGATATGAG TGAGTACATG GAAAAAGTCT CGGTCACACG GCTCATTGGC GCATGTCCTG GCTATGTCGG GTATAGTGAA GGTGGGCAAC TAACTGAAGC TGTAAGGAGG AGACCTTATT CAGTGGTTCT GTTTGATGAG ATCGAGAAAG CTCACCCTGA TGTCTTCAAT GTCTTGCTAC AACTACTAGA TGATGGAAGA ATAACCGATT CTCATGGTAG GACAGTAAGT TTTACAAACT GCTTTGTCAT AATGACGTCT AATATAGGAT CTCAACACAT ACTTGAGACT ATCCGCAACA ATGAAGATAG CAAAGAAGAA GTTTATGAAA TGATGAAGAA ACAAGTTGTG GAGTTAGCAA GAAAAACTTT CAAGCCAGAG TTCATGAATA GAATTGATGA ATACATAGTT TTCCAGCCTT TGGATTCAAG AGAAATATCC AAAATCGTGG AGTTACAGAT GAGACAATTA AAGAAGAGGT TGGAACAGAA TAAAATAAAT CTTGAATGCA CGAAAGAAGC GGTGGATCTC CTTGCTCAGC TTGGGTTTGA CCCCAAGAAC GGGGCAAGAC CGGTGAAGCG AATGATTGAG AAGCTTGTGA AGAAAGAGAT CACCTTCAAA GTTTTGAAAG GAGATTTTGC AGAGGATGAC ACTATTCTTA TCGATGCTGA CCAGCCGAAC AACAAATTGG TCATCAAGAA GATGGATAAT AATGCTCATG TCAAACAAAA TTAGACGATT TGGTTTTGTT CTAT 
Length2484
Protein Sequence
Protein Residue
Map Locationscaffold_4: 3360739.. 3363874
Download Sequence
A.thaliana
AGI-codeAT2G25140.1
Descriptioncasein lytic proteinase B4
TAIR curator summaryEncodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Targeted to the mitochondrion, also referred to as ClpB-m. Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress.
Alias[CLPB-M][CLPB4][HSP98.7][CASEIN LYTIC PROTEINASE B-M][casein lytic proteinase B4][HEAT SHOCK PROTEIN 98.7]
Gene coexpression
MR
MR Locus Description
18.9473 Ahg311624 F-box/RNI-like superfamily protein
31.4643 Ahg342972
35.4401 Ahg478320 GDSL-like Lipase/Acylhydrolase superfamily protein
38.7685 Ahg352619
41.1096 Ahg939096
41.1582 Ahg323014 Cyclin-like family protein
43.8634 Ahg917676 WUSCHEL related homeobox 2
44.6766 Ahg495065 ethylene response factor 110
50.7346 Ahg325356 Pectin lyase-like superfamily protein
56.4447 Ahg896275
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression