| Annotation |
|---|
| Description | jgi|Araly1|938101|scaffold_502292.1 |
| Sequence |
CGATTCTTCT GGATAACTTG ATGCCGCAGG ATCACGCTTC GTGGGATCGG AAAGAGCTCT TGAGGCAAAG GAAGCACGAT AGGCCTGAAC AATCTTCTTT TGATTCGCCG CCTTTTAGAT GGAGGGATTC GCCTTCTACT CCTTCTTCTC ACCATGTTCC CAGAGAGTTT TCTTCTCGTT GGGGATCTGC AGACTTCCGC AGACCTTCTT GTCATGGTAA GCAGGGTGGA CGGCACCAGT TTGTGGAGGA GACTAGTCAT GGATACGCAT CTTCTCGGTC CAGTGCCCGG ATGTTTGATA ATGATTACTA TAGGCCATCA GCATCACGTG GAGACTGGAG ATATACCAGG AATTGCAGGG ATGATCGAGT TTCTGTAAGC CAAAAGGAAT GGAAATGCAA TACATGGGAG ATGAGTAACG GGTCTTCCAG AAGTTTTGAG AGGCCATTTG GTATTAGAAA TGGTCGGAGG TCAGTTGATG AAAGGCCGTT ACATGCTTCA GATACTCATA CTACTGTGGT GAACTCTTTG GATCCAGCCA ACTCCACTCA TCAGCCGGAC AATGAGATCT GTACCCCAGT ACGCTCACTC AAATTTAAAA ATGAGCAGAA ATTTTCAGAT CAAAGGCTAT CACTTCCTTC AGATCCTCAT TCTGACTGTG TTAGCTTGTT TGAACAGCCT CCTTCGGAGA ACAATTATGG CAATAAGGTT TGTTCACCAG CAAAGCAATG CAATGATTTG ATGTATGGTC GGAGGTTAGC TAATGACAAT TCATTAGATC CTCCAGTCCT CAATGCAGAG CTGGCGGGGA CTTGGGAGCA ACTTCACCCG AAAGACCCGC AAGATAATAA TGGGTTACAT GGTATCAGTG ATTTAGACGG TGCTACGAAA TGTGCAAAGG AGGCTTCTCT GGGAGCAATT GGGAAACTTC CACTGTGGAA CAGTTCTGGG AGTTTTGCAT CTCAGAGTTC TGGTTTTAGT CATTCAAGTA GCTTAAAAAG CTTGGGGGCT GTTGATTCCA GCGATCGGAA AATTGAGGTT CTTCCTAAAA TTGTTACTGT GACTCAATCT TCTTCAGGAG ACGCTACTGC ATGTGCCACA ACTACTCATC TTTCTGAGGA GATGAGTTCT AGAAAGAAAC AACGTCTCGG GTGGGGTGAG GGCCTGGCGA AATATGAGAA AAAGAAAGTT GATGTTAACA CAAATGAAGA TGGAACGACA TTGTTGGAAA ACAGTTCAGA GGAACTGCAT TCTTTGAACA AAAATATTGC TGATAAAAGT CCCACAGCAG CCATTGTTCC AGATTATGGT TCCCCTACAA CTCCATCCTC TGTAGCTTGC AGTTCATCAC CAGGGTTTGC AGATAAATCA TCTCCGAAGG CTGCTATAGC TGCTAGTGAT GTCAGTAACA TGTACCGCTC ACCTAGTCCC GTGTCTAGTA TTCACCTTGA ACGATTCCCA ATTAATATAG AGGAGCTTGA TAACATCTCA ATGGAGCGTT TTGGCTGTTT GCTCAATGAG TTGCTTGGTA CTGATGACCC TGGTACAGGG GATTCCAGTT CTGCCCAATT GACATCAATG AACAGATTAC TTGCCTGGAA AGGTGAAATT TTGAAAGCTG TGGAGATGAC TGAATCGGAA ATTGATCTCC TTGAAAACAA ACATAGGACG CTAAAGCTTG AAGGTGGAAG ACACTGCCGT GTTGTTCAAC CCAGTTCATA CTTCTGTGAC GGAGATGCAA ATGTTCCCAA GGAGCAGGCT TCTTGTATTT TGGATCCTAA GGCAGCAGCT TCCTCTGTAG CTGAAACACT GGTGAGATCT CCTGTTCATC AGGCCGGTTT AGCCAAGGTT CCTGTTGATG TTTCTGAAGA TAATCCTGGA GCAGTTAAAT CTCTATCCCA ATCTTTTGCC ACTGTCAAAA GCAATGAAGA TATACTGCCC ATACCGTCTA TGAAGGCAGC CGCTTCTTCC AAAGAGATTA ACACACCTGC TTTTGTCAAT CAGGAAACTA TTGAGGTTTC TTCTGCTGAT GATAGCATGG CCTCCAATGA AGACTTGCTC TGTGCGAAGT TATTATCTGC CAATAAGAAA TATGCTTGTG AATCATCTGG AGTATTCAAT GAGTTGCTTC CAAAAGATTT CAGTTCGTCT GACAACTCAA GATTCCCTGG CATATGTCAA ACGCAGTTTG ATTCTCATGT CAAAGAAAAA ATTGCAGATA GGGTAGACCT TTTGAGAGCT AGGGAGAAAA TTTTACTCCT TCAGTTTAAA GCGTTTCAGC TCTCATGGAA GAAAGATTTG GATCAGCTAG CTTTAACAAA GTACCAATCA AAGTCTAGCA AAAAAACAGA ACTATATCCG AATGCAAAAA ATGGAGGGTA TCTGAAGCTT CCCCAACCTG TACGCCTGAG GTTCTCTTCT TCAGCTCCAA GAAGGGATAG TGTAGTCCCC ACAACAGAGC TCGTAAGTTA TATGGAAAAG CTACTTCCGG GTACCCATCT AAAGCCTTAT AGAGACATTT TGAAAATGCC TGCTATGATT TTGGATGAGA AAGAGAGGGT GATGTCGAGG TTTATTTCTA GCAATGGACT GATTGAAGAT CCATGTGACG TTGAGAAGGA AAGAACAATG ATTAATCCTT GGACCTCAGA GGAGAAAGAA ATATTTCTGA ATTTGCTAGC ATTGCATGGG AAGGATTTCA AGAAGATTGC TTCATATCTT ACCCAAAAGA CAACTGCGGA CTGTATTGAT TACTACTACA AAAACCACAA GTCTGATTGT TTTGGGAAAA TAAAGAAGCA GCGTGCTTAT GGTAAGGAAG GGAAGCACAC CTACATGTTA GCGCCACGAA AAAAGTGGAA ACGTGAGATG GGGGCTGCCT CTCTTGATAT TTTAGGGGAT GTCTCCATTA TAGCAGCAAA CGCCGGAAAG GTTGCATCAA CCAGGCTGAT CTCTTCCAAA AGGATCACCC TTAGAGGTTG CAGCAGTGCT AATTCATTGC AGAACGATGG AAATAACTCT GAAGGGTGCT CCTACAGTTT CGATTTCCCT CGTAAGAGAA CTGCTGGTGC AGATGTTTTA GCTGTTGGTC CTTTGTCATC AGAGCAGATT AATTCTTGCT TAAGGACTTC TGTGAGCTCT AGAGAGAGGT GTATGGATCA TCTAAAGTTT AATCATGTCG TAAAAAAACC TCGGATATCT CACACTCTAC ATAATGAGAA CAGCAATGAA GAAGATGACT CATGTTCGGA AGAGAGCTGT GGGGAAACAG GTCCTATTCA CTGGACAGAT GATGAGAGAT CTGCCTTTAT ACAGGGGTTC TCGCTTTTTG GCAAGAATTT TGCTTCAATA TCAAGGTACG TCGGGACAAG ATCTCCAGAT CAGTGTAAGG TTTTCTTCAG CAAAGTTCGG AAATGTCTTG GGTTGGAATT TATACAGTCT GGATCTGGAA ATGTAAGCAC GTCCGTAAGT GTTGATAATG GCAATGAGGG TGGTGGAAGC GACTTGGAAG ATCCTTGTCC TATGGAGAGT AACTCTGGCA TATGCGATAA TGGAGTTTGT GCCAAGATGG GTATGAATTC TCCTACCTCA CCTTTTAATA TGAATCGGGA TGGTGCTAAT CATTCAGGCT CTGCAAATGG GAAAGCCGAC CTTAGTAGAT CAGAACAAGA GAATGGGCAG ACATATTTGT GTGTGAAAGA TGATAATAAT CTCGTGAACA ATGCATATAT CAATGGCGGT TTCCCGAGTC TAGTTTCAGA ATCTTGTAGA GATTTGGTAG ACATTAATAC TGTTGAGAGC CAGTCTCAGG CTGCCGGAAA AAGCAAGAGC AATGATCTAA TGTCAATGGA AATCGATGAA GGTGTCTTAA CATCTGTCGT TGTATCTTCT GAGCCCTTGT ATTGTGGCCT AAGTGTTCTT TCCAATGTTA TTGTGGAAAC CCCTACAGAA ATCTCACGAA AGGGCTCAGG AGATCAAGGT GCTGCAATTC CTAAACTTAG TTCAAAGAAT CAGGATGAAG TGATGCAAGC TGCAAACAGA ACCAGAAATT CTGGCCTTGA ACCTGAAAGT GCACCTTCAG GTTTCAGGTA CCCTGAGTGT CTGCACCATG TTCCGATTGA GGTGTGTACG GAAAACCCTA TAGGCGTCAG TGTACCACGA GGAAATCCAA ATTGCCATGC AGAATCTGAG TCGGGAAATT CTCTTGTTGG AAAAGTTGTC GAAACACATG ACTTGGGTTG GCCGAAGAAC AATCTGGAAT TGAATAGGAA GCTTCGGGTT TTAGGCCATG TAAACCCTGA TGAGCAGAAT GGTCAACTAA ATGCAACCAA TGCAGGATCT TGTCAAATTC CCCAGAGAGC AGTCACCCAA GATCTGAGCA GGATAAGTAG ATCAAAATCC GATTTGATCG TAAAAACCCA ACGTACAGGT GAAGGTTTCA CACTCAACAA GTGTACTAGT TCAGCTCCTA AGCCTCTGGC AGTATTCCAT AAAGAGGGTA GATCTGGTCA TAGCAGGAGC CATTCGTTTA GTTTGTCTGA TACTGAGAGA CTCGACAAGA ATGGAGATGT GAAGCTGTTT GGTACAGTAC TTACTGCTGA TGAGAATGGA ATAAAACAAA AACACAATCC ATGTGGAATT GTCAGGTCAT CATCAGCCTT GAGCAGGGAC CATGATACAA GACATCATTA CATTAATCAG CAACACCTTC AGAATGTTCC CATTACGAGC TATGGGTTTT GGGATGGCAA CAGAATTCAA ACCGGGCTCA CATCTTTGCC AGAGTCGGCC AAGTTGCTTG CAAGTTGCCC TGAAGCATTT TCCACGCATC TTAAGCAGCA AGTTGGTAAC AGCAAAGAGA TTCTGCTTGA TGTTCATGGT GGAGTTTTGA GCTTTGGTAA GCATAATGAA GATAGAGCCG AGTCCTCAAG CGCTAAGGAT GAAGGTAACA TAGGAGGGGT AAATGGTGTA GCAGAGGCAG CCACGTGAAT TAAAAAGCTT CTTAGGGTC |
| Length | 5009 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 15132414.. 15138972 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G52250.1 |
| Description | Duplicated homeodomain-like superfamily protein |
| TAIR curator summary | Encodes a protein with a putative role in mRNA splicing. |
| Alias | |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.64575 |
Ahg471472 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 3.16228 |
Ahg493373 | SET domain protein 2 |
| 3.60555 |
Ahg488829 | Telomerase activating protein Est1 |
| 3.74166 |
Ahg489126 | Adaptor protein complex AP-2, alpha subunit |
| 7.54983 |
Ahg492730 | sphingosine kinase 1 |
| 12.3288 |
Ahg485166 | BAH domain ;TFIIS helical bundle-like domain |
| 13.5647 |
Ahg942891 | global transcription factor C |
| 14.6969 |
Ahg492440 | Transcription elongation factor (TFIIS) family protein |
| 15.4919 |
Ahg924045 | calpain-type cysteine protease family |
| 16.2481 |
Ahg951196 | Glycosyl hydrolases family 31 protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|