| Annotation |
|---|
| Description | jgi|Araly1|492730|fgenesh2_kg.7__2163__AT4G21540.1 |
| Sequence |
ATGGCTCTTC AAATGCCCTT TACAACAATA TCAAGAAAGA TATCATGTAT GAAGTTGTTG CCGCTTTGCC CTCTTCAGTT GTCAACAACG CAAACACCTA CAACAATTCC CATGTCTCTT TCCTTCTATA AGAATGAACT CTCTGATGAT ACACCTTGTC AAAGTGGGTA CACTGATTAC ATATCTTTTC AAGTCCCCGA TGAAACCTTC CCAGAGATTC CGAACTGTGT TGGCATAGCT AAGGGTTTTA AGCAGAACGC CAACAATGAG AAAAATGGTT ATACTTCTCT GGAAGCCGTT TTGTTATCTG TACCTAATGG CTACACTTGT GTCGATTTGT CTCTCTACAA GGATAAAGAA CTGGTTTTAT TATTGAATAA GACAAGTGCA GATTCCGAAG GCTCGGGAGA AGCATGCATG ATGGTTGTAC AAACTGGTGA CCTTCCATTC ATTTCCATTT CAAGATCTAG TTCTCTAAAC CAGTGGGAGC TAGAGGATTT GAAGGTATTA CTAATTTCAG TCATTCTCAT CGACGGCTCG ATTGTTAACC TGGAAATGGA GAATGAAAAG GTTCGCAAAG TTCCACATTC TGTCATTGCT CCTCTAGCAG TAAGCGCTTC AAGAGGAGTG GCTTGTGTTT TTGCTGAAAG AAGACGAGCT CTGGTGTACA TATTGGAAGA AGATGAAGAC GAAGAAATCT CTGATGACAA AGCGTTTACG CACGTCGGCT CAGCCACTCG CCAGGTTAAG CGCGTGGTTG TCACTTTCCC TATGATCAGA CAAAGCCGTA CAAAAGTCAG CTTTGGAAGC AAGACGAAAC TCTCTCTCTC TCTCTATCTA AGTTCGTCAC CGTCACGGAG GTTGTCTTGT CTTATGGAGA ATGATCAAAT GATATCTCCG ACTGATATAA TCACCGGCAT AGTGTTCATT GATGGTGAAT TGGCTATGTT GACTTTGACT GCCGACGGGG AGCTACGGTG GACAGAGTAC GGACTCCGGC AACAGTTGTC GATGAAGAAG GATGTTCTTG GTTTCGTTGT CGAAGGTAAG CGGATTAGAG TAAAGGTCGT GGTTGAGAAA GAGGCAGGAA TCTGCTGTGG ACAATTTGAT GGAGATTTCG TGAGGAAAGA TTTCGTCTTT GAGCCTCTCA TCGATCAAAA TGGATGGTGC TTTAAGCTTC GTCAATACCT TGATTCTCTT GGTCGGCCAA AGAGATTACT TGTATTTGTG AACCCGTTTG GCGGGAAGAA ATTGGCGAGA GAGATTTTTG TTAAGGAAGT GAAGCCGTTG TTTGAAGATG CTGATGTTCA ACTTGAGATT CAAGAAACCA AGTATCAGTT GCATGCAAAG GAAATTGTTA AGTCCATGGA TGTATCAAAA TATGATGGTA TTGTTTGTGT CAGCGGCGAT GGTATCCTTG TTGAGGTTGT AAATGGACTG CTCGAAAGAG CAGACTGGAG AACTGCCTTA AAATTGCCGA TCGGAATGGT CCCTGCAGGA ACTGGTAATG GCATGATAAA GTCATTGTTG GACACGGTTG GGCTTCGATG CTGTGCAAAT AGTGCTACTA TTTCTATTAT CCGAGGTCAT AAACGTTTTG TAGATGTTGC AACTATTGCA CAAGGGAATA CCAAATTCTT CAGTGTGTTG ATGCTTGCTT GGGGTTTAAT AGCTGATATA GACATCGAGT CAGAGAGGTT CAGATGGATG GGAAGTGCTC GCATTGACTT CTATGTACTT GTTAAATTGC TGGCTCTTCA GAGGATAATA TGTTTAAGAC AATACAATGG ACGAATTTTA TTTCTACCGG CTCCTGGGTT TGAAAGCTAC GGACAGCCAG CCAGTTGCAG TCTATACAAA GAGCCACCTG TTAGCGATAA AGAGCTCGGG TACCAAGGAC CTGAAACTAA ATTTGAAGAT CTAGAATGGA GAGAAATCAA AGGTCCATTT GTTACTGTAT GGCTTCACAA TGTTCCCTGG GGTGCTGAGA ACACTTTGAC TGCTCCTGCT GCAAAGTTTT CTGATGGCTT TCTGGACTTG ATTGTATTGA AAAACTGCCC TAAGCTTGTC CTGCTCTCAC TTATGAGACA GACGAGTAGT GGAACACATG TTAAGTCACC CTATATAACG TATCTAAAGG TGAAGGCATT TGTGCTAGAG CCGGGTGCAC TTATAGACGA ACCAGACAAG GAAGGAATCA TAGATTCAGA TGGAGAGGTT TTGGCAAGAG GAAAAAGAGC ATATAACTGT GATCAAAAGG CTTTGATGTC TTACGACAAG CTTCAAGTAA CTGTTGATCA AGGAAATGAG AACCAAACAA ATGTTTTAAA GATTGTTGTG CGAGTTATTT CTGATTTTAT CTTGAGCTTC AACTCTCATC AACGACGGAA CTCCTCTTCC TCCCTCTTGC CTATGGATCG TCAGCCGGAG AGGGAGAATG ATGAACTACC GTCTCCGGCG ATAATTTCCG ACCGTGTTCT GGTAAATGGT GTTGTCACGC CGTTAACTTT GACCGCCGAC GGAGAGCTAC GATCGACGGA ATCTGGACGC CGGAAATCGA CGGTGGCGAA AGAAATCCTG AGTTTCGTCG TTGAAGGTAA CAAGGTTAGA GTAAAGACTT TGGTGGAGAG ACGAGGAGGA ATTTGCTGTG GAGGAAGTGG TGGAGATTAT ACGAGGAACG ATTTCGTTTT CGAGCCTCTC TCTGATGAAT CTAGGAAGCT ATGGTCCGAT AAGCTCAATC AACATCTCGA CTCTCTCGGT CGGCCAAAGA AATTGCTTGT GTTTGTGAAC CCCTTTGGCG GGAAGAAATC AGCGAGAAAG ATTTTTCAAG AGGAAGTGAA GCCATTATTT GAAGATGCTA ATATTCAAAT TGAGATTCAA GAAACCAAGT ATCAGTTGCA TGCAAAGGAG ATTGTTAGGT CTATGGATGT ATCAAAATAC GATGGTATTG TTTGTGTTAG CGGCGACGGC ATCCTTGTTG AGGTTGTAAA TGGACTGCTT GAAAGAGCAG ACTGGAAAAC TGCCTTAAAA TTGCCGATCG GAATGGTCCC TGCAGGAAGT GGTAATGGCA TGATTAAATC ATTGTTGGAA CCGGTAGGGC TTCCTTGTAG TGCAACAAGT GCTACTATTT CGATTATCCG AGGTCGTACA CGTTCTCTAG ATGTAGCAAC TATCTCACAA GGGACTACCA AATTCTTCAG TGTCTTGATG CTTGCTTGGG GTTTAGTGGC TGATATAGAC ATCGAGTCAG AGAAGTTCAG ATGGATGGGT AGTGCTCGAT TTGATATCTA TGGTCTTCAG AGGATAATAT GCTTAAGACA ATACAATGGA CGAATTCTAT TTGTGCCAGC TCCTGGGTTT GAAAGCTATG GGCAACGAGC CAGTTGCAGT GTAGATAAAG AGTCATCTGG TAGTGATAAG GCACTCATAT ACCAAGGACC TGATACTAAA CTCGAAGATC TGGATTGGAG AGAAATGAAA GGCCCATTTG TTTCAGTATG GCTTCATAAT GTTCCCTGGG GTGCTGAGAA CACTTTGGCT GCTCCTGACG CAAAGTTTTC TGATGGCTTC CTGGATTTGA TTGTCATGAA AGACTGTCCT AAACTTGCCT TGCTATCACT TATGACAAAG TTGAGTGATG GAACACATGT TCAGTCACCA TATGTATCCT ATCTGAAGGT GAAGGCATTC GTACTGGAGC CAGGTGCACG CATAGACGAA CCAGACAAGG AAGGAATCAT AGATTCAGAT GGAGAGGTTT TGGCAAGAGG AAGAGGATCA TACAAATGCG ATCAAAAGGC TTTGATGTCT TATGACAAGC TTCAAATAAG TGTTGATCAA GGTTTAGCCA CTCTCTTCTC TCCTGAATAA TTCTGATTGA TACATGAGAT GTGATGA |
| Length | 3897 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 8598543.. 8618944 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G21540.1 |
| Description | sphingosine kinase 1 |
| TAIR curator summary | Encodes a sphingosine kinase, also has enzyme activity towards other plant long-chain sphingoid bases. Involved in guard cell ABA signalling and seed germination. |
| Alias | [SPHK1][sphingosine kinase 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2 |
Ahg484555 | ARM repeat superfamily protein |
| 2.64575 |
Ahg495656 | beta-amylase 4 |
| 5.09902 |
Ahg487372 | arginine-tRNA protein transferase 1 |
| 7.54983 |
Ahg938101 | Duplicated homeodomain-like superfamily protein |
| 7.74597 |
Ahg478006 | multifunctional protein 2 |
| 8.66025 |
Ahg480436 | Phox-associated domain;Phox-like;Sorting nexin, C-terminal |
| 16.0624 |
Ahg494356 | ornithine-delta-aminotransferase |
| 19.7484 |
Ahg471472 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 27.0555 |
Ahg488386 | U-box domain-containing protein |
| 30.0666 |
Ahg481550 | ARM repeat superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|