Detail



ID : Ahg939586

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|939586|scaffold_600130.1
Sequence
AGTCTCGACG AAAGAGAAAC ATGCGTCATC TAGTTTCATC GTTTCTTTGT TTCTCATCAT CTCTGGCAAG TGGTGATAGA ATCTGCTATG TTCAGTTCCC TCAGAGGTTT GGAGTTATTG ACCCAAATGA TCGTTATGCA AACCACCACA CTGTCTTCTT TGATGTTAGT ATGAGAGCTT TGGATGGAAT TCAAGGTCCA ATGTATGTGG GAACTGGCTG TATCTTCCGA AGAACAGCTC TCTACGGGTT TAGCCCGCCG AGAGCAACTG AACATCATGG CTGGCTTGGA AGAAGAAAGG TCAAGATATC GCTGAGGAAA CCGAAGGCCA TGTACAAGCG AGTCGATATC TCGTTTACCT TGACTTCCAA GTCATCTACA CCAGAAGAAG GAGAGGATGA GTTTGCTGAT CTGTATGCTG TGAAATGGAG CTTTTTGATG GTTCCTCCAT TGTCGATCAT GATGGTGAAT ATAATTGCGA TTGCGGTGGG GCCTGCGACG ACTCTGTACA GTCCATTTCC GCAATGGAGT AAGCTTGTTG GAGGAGTGTT CTTCAGCTTT TGGGTGAGAG ACAAAGAGCT GAGAAGAGAA GCCGATAGAG AAGAGAAAGG GCAAATATTT GCTCCAAAAT GGTTTGATGA AACAGAGGAA GTCACTCCTA CACCATGGGG TGATCTCGAA GTGTACCAAT TCAATGGAAA GTACTCGGTG CACCGCGCCA CAGCCGATAA CTCTGAGGAT ACAACGGATG TGAAGGTGAC CCAATTCAAC CCTTGGCAAT TCCAAGATCT CTCTGCTTAA TCCTCGGGGT GCCATTTGTT 
Length820
Protein Sequence
Protein Residue
Map Locationscaffold_1: 689815.. 691134
Download Sequence
A.thaliana
AGI-codeAT1G02730.1
Descriptioncellulose synthase-like D5
TAIR curator summaryEncodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.
Alias[ATCSLD5][CSLD5][CSLD5][SOS6][cellulose synthase-like D5][CELLULOSE SYNTHASE LIKE D5][SALT OVERLY SENSITIVE 6]
Gene coexpression
MR
MR Locus Description
1 Ahg941774
64.7611 Ahg951731
69.1014 Ahg934699 F-box family protein
79.196 Ahg478533 Sterile alpha motif (SAM) domain-containing protein
81.5782 Ahg921582
81.9512 Ahg335111 ATP binding microtubule motor family protein
84.8175 Ahg901398 Defender against death (DAD family) protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression