Detail



ID : Ahg941399

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|941399|scaffold_601943.1
Sequence
TCTGGTTTCA AAGTTTGTTA GATGATGGAT ATCACCATTG ACGAGCTTCA TAGAGAAAAA GATGCTTCAG AGACTTTGAC TACAGCTCAT TTCCAAGCTC CTTCCAGTGA TCGTCCCATG TTTTGGACTA TATGTCCATT TTGTACTGTT AGGTACAGAT CCTATAAAAG CCTTCTCAAC AGACCGAGCC GGTGTCAATC TTGCTACATC AACTTCTTTG GGAACCAAGT CCCTGTTCAA GGCCCTACAC CAGGGGAAAA AACAAGTCAG ACAACTTTGC CTACTATGGA GAAAACTGCA GTGAGTCAAA ACCATGTTAT TAGGAGCAAT TTGGCTAATT CGACACCCAA GAACCAGCTT CAGCCGCAAA AAGCTCGACC TCAGACAGTT CCATTCAGAT CCTGTCCAAG CTTTTGGACT ATGTGTCCAT TCTGTGCGAA TAAGTATCGT TTTCTGAGAA AGTATATCAA CAAATGGCTC AATTGTCAGA AGTGCAAGAA GAAGTTTCAT GCGGTTGAAG TGAATTTCTC CTTGCTCCAA CCGAAAACAG TCCCAAGTAA GAATCCAGGC ACACATTTGT CTAGGGAGGA AAGTTCCCCA GGGTTGAGCT GTGGTGAGAA GAGACAGAGG AATGAGTATG GTGAAATTTC CAATACTGCA AATTGCAGCA ACTCTGAAGA TGTTATTGTA AATCTAAGTA AAAATGGCAG TAGAAGGGTG TTGGCTGATA ATGGAGATGC AGGGGAATAT TCTGGAAGCA GAAAGCAACA CCATGAGGTT GACCTATTCA AAGAAACATT GCCAAATGTC ATGAACAGGA ATGGTCAGCT AAATAAGAAA CAATATGCTC AAGTGGGAGC TGCAATGGGG ATTGCTCAAA ATATTGAGGC AGATAAAAAC TCCGGTTTTT GTGATACAAG TTCTGAAGTT GTAGTACAGC CAAAGACTTC TGAGTGTGCT GGTCCAATGT TTAACGACAG TAGGAGTGAT TTGCTTGTGT TGACACCCAA GAATCAGCAC GAAAAAGCTC AAGCTTTCTC CTTGCAACAA CAGAATAAAG TTCCAAGTAA GAATCCAGGC ACCCATTTCT TTGGAAATGA AAGTTCTCCA GGTTTGAGCT TTGCTGTGAA GGTTGGTGAG AAGAGAAAGA GGAATGAGTA TGGTGAAAGT TGCAATACTG AAAATCACAG CAAGTTGGAA GATGTTATTG GCAGTGCTGT ACACAATACT AGAAGAGGAA CCAATGATAA TGAAAATGCA GGAAGGCTAG AAGCGTCTGG ATGGGGGAAG CAACTTCATG AAGTTGATCG TTCTGATGAA ACATTGCCAA ATGTCATAAA GACGAATAAG AAGTTGAATA AAAACCAATA TGCTTTGGGG AGCTCTGTTT TATGTGATCC AGGTTCAGGA AAGAATCGAG ACACAAATTT CTTTGGAAAG GTAAGTTCCC CAGATTTGTG CTGTGCTATG AATGTTGATG AGAAGACAAA GTGGGATGAG TATTGTGAAG ATTTTAATAC TGAAAATTGG AGCAAGGCTG AAGATGTTAT CGTAAATCTA AGTAAAGATG GCAATGGAAG ACTGTCGGAT GATAATGGAG ATGCAGGAGA AGAGTCTGGA AGCGGAAAGC AACTCCATGA GGTTTATCTT TGCAAAGAAA CGTTGCCAAA TGCCATGAAC AAGAATGGTC GGCTGAGTAT GAAACAAGAT GCTCAAGTGG GGGCTGCAAT GGGGATCTCT CTGAATCTCG AGGCAGATAA AAACTCTGGT TTTTGTGATA AAAGTTTAGA AGTTGTAGTA CAACCAACGA CCTCTGAATG TGCCGGTCTA AAGATCAATG ACTTTGATAA ACTGAGGGAA GAAGTAAAAT TTGCAGTTGG CCAGGCCTGG GCTCTTTATG ATACAGATGG GATGCCTCGA TTGTATGCTC TGATCAGAAA AGTTTCATCT CCTTGTTTTC GGCTTAGGAT CACATATCTA GAGCCAGTTC CAGGTAACGA GAAAGAGATC CAATGGTTTG AAGAAAACTT GCCTGTTTCT GTTGGTAACT TCAGGCTTGG GAAAAATCTG AACACAAAAG ATCGTTCCAT ATTCTCTCAT CATATCGCAT GCCGTGAAGG AAGCACTGGT CATATTGCTG TCATCCCAAG AAAAGGCGAG ACTTGGGCAT TGTTCAAGAA CTGGGATATT AACTGGTCTT CAGAGCCAGA TTCTCACCGC AAATCTGAGT ATGAATTTGT CGAAATTTTG TCAGATTACG CTGATGGAGC TGGTGTATCT GTTGCGTTCT TGCATAAAGC AAAAGGCTTT GCAAGTGTGT TCTTTCGATT GGGAACTAGT AATGCAGACA TATCGCAGAT TCTACCTCAC AGTTTATATC GGTTCTCCCA TAGGATTCCT TCCTTCAACC TGACTGGAAT TGCAGGAAAA GGTATGCCAA AAGATGCTTA CGAGCTGGAC CAAGCTCTAT TACCTGAAAC AATCGATGAG ATAATTGTCC CTCCACATCT ATTAGCAGAG CCTAAACCAG AAGCTCTCTA CTTTCCTCGT GATGGAAAGG TTTTCCAAAC TGGCCAGATC TGGTCATTTT ACTATGGTAA CGTTAACTTG CCTCTATACT ACTGTAGGAT ACAAAGGATC ACTTTAACTC AGGCATTCGA GCAGGAAGCA GAATTTAAAC TATCTGTAAG TCGGTTAAAG ACTAATCCTT TCCCTGAGAA TGTCATTCAG TGGGAGGACA AGAGAATGCC TGTTGGCTGT GGAACTTTCT CGGTGAGGAA ATGTTTCGAA GTACTCACTC CAGATGATGT TTTACATCAG ATAGTGTCTC AAACCTCCAT GGATGGAAAT GATTATACCA TTCTTCCCAA GATTGGGGAT GTTTGGGCCA TATACAGATT CTGGACTTGT CACAAGGAGT TCAAGGACAT TGGTTCCTGC AGCTATGACA TTGTCGAAGT TCTTGATGAC ACTGTGGACT ATAAGGTTTT AGCATTGGAG GCCGCGATGT TTTCTAATGA AGAGGAAGAT ATAAATACAT TCTTCAGAGC AGCTGAGAGT AGGCATCCTG ATTGTGACAA TGAGGATGGG TCAGAAGTGA TATTTACAAT CCCAAAGTCA AAAATGCTCA GATTCTCGCA TCAGATTCCT GCTTCCCGAG TAACCAAGGA GATAGATGGA GATAAGAAAG AGTTTTATGA AGTTGATCCT AAAGCATTAC CTACAAACGT GAGGTTAAAA GACCATTGAG CAAAGGGAGG AAAGTGAGG 
Length3269
Protein Sequence
Protein Residue
Map Locationscaffold_6: 7452165.. 7462632
Download Sequence
A.thaliana
AGI-codeAT5G18740.1
DescriptionDomain of unknown function (DUF3444)
TAIR curator summary
Alias
Gene coexpression
MR
MR Locus Description
23.5372 Ahg321478 Fatty acid hydroxylase superfamily
44.7325 Ahg949400 F-box and associated interaction domains-containing protein
46.0217 Ahg351608 Protein of Unknown Function (DUF239)
46.2817 Ahg326746 phloem protein 2-B12
47.6235 Ahg331346 TRICHOME BIREFRINGENCE-LIKE 4
53.6936 Ahg949069 transposable element gene
63.9687 Ahg896477 cytochrome P450, family 71, subfamily B, polypeptide 17
69.7495 Ahg937171 lanosterol synthase 1
75.5248 Ahg351609 Protein of Unknown Function (DUF239)
77.4274 Ahg901222 homeobox-3
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression