Detail



ID : Ahg948109

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|948109|scaffold_704338.1
Sequence
TGAGTCAATT CAATTTTAGC CTATGGGGTG GACCTCAAGC GTTGTAAATG GTTTGAGCAA CATTCACTTG CAAAGGAGGC AACGAACAGA GGATGAAACA CGCTCGGCAA TGCTTGATCT TGATTTTCTT GATTGCCCTA TTTGCGTTGA GCCATTTACT ATTCCTATCT TCCAGTGTGA TAATGGACAT TTAGCTTGCG CTTCTTGCTG TCCCAAATTG AGTAATAAGT GCCCTGCTTG TACTTTGCCT GTCGGTCACA ATCGCTGCAG AGCAATGGAG AGTATTCTTG AATCAATCTC TGTCCCATGC CAAAACGCCA AGTTTGGTTG CACCAAGAAA GTCTCTTATG GGAAACAATC AACTCATGAG AAGGAATGTA TCTTCTCTCC TTGCTTTTGC CCCATACAGA ACTGCAATTA TAGTGGCTTG TACAAGGATG TGTACTATCA CTTTGGTATT CATCGCGACA TAGGAAGAGT TGATTGTTGG TTTAATCTTG GACAATTTGT TGAATTAGAC TTTGACTTCA AGGAGAGGGC AATAATGGCT ATGAACGCAT ATAAGGAAGA CCTATTGTTT ACTGTGCAAT GTCTTAGTGA CCCAAATGGT ATTACTTATG TGACTGCGAG CTGTATTGCT CCTTCTTCGC CGGAAGTTGG TGAATTCTCG TGTCATATAT CAACTACTTT TCATGAACGT GCTATCGTGT ATAAATCGAT GAAGTCGCTA ACTGAGAAAC AAGCAAAGGA ACTGCGAGAG ATGAAAGGAG GCATCAACAT CTTGCAGAAT CTTAACAATA GAGAGAGACA AATCATGGAT ATTGAAGCAT CCTTTGAGGC ATGCAAGTCT CAACCAATTC ATTCCACCAA TAAAAACGTG CAGCCGGTTG AAGTTTTACC ACTGTTGGCA TATTTTGATA GGTTGGTTGC TCCTTATTTT CTCTTTGAGA CAATCTTAAA TCTGAATTTC CGAATCGGCC AATTTTTTCT CATAATAGCC TTGCATGTAG ACACAACAAT GAAGCCCTTG AAACCTGACA CTTAACCACA TGGTGGTGGG CGAGT 
Length1065
Protein Sequence
Protein Residue
Map Locationscaffold_7: 23124990.. 23127550
Download Sequence
A.thaliana
AGI-codeAT1G79730.1
Descriptionhydroxyproline-rich glycoprotein family protein
TAIR curator summaryEncodes a PAF1 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast PAF1 is a component of a five-member complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.
Alias[ELF7][EARLY FLOWERING 7]
Gene coexpression
MR
MR Locus Description
3.4641 Ahg891972 nucleolin like 1
17.1756 Ahg887595
25.2587 Virus1847
32.1248 Ahg921556
36.3318 Ahg943111 Tetratricopeptide repeat (TPR)-like superfamily protein
37.6829 Ahg336471 Ankyrin repeat family protein
38.8844 Virus3928
39.4968 Ahg900193 transposable element gene
41.3763 Ahg949983 Protein of unknown function (DUF295)
48.0625 Ahg476068 Transducin/WD40 repeat-like superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression