Detail



ID : Ahg949173

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|949173|scaffold_801060.1
Sequence
GTTTCATTGA AACACGGTCG ATGCTACAAA GCGAGGAAGA TCGACTATCG AAGCATGTGA GGTCTGTCCC TAGTAGCGCT CCTCCTTCTG CTTCTTCATC TTCACCTACT CTTCTCTACA CTTCATCGGA GCCATCCCAG AATCATCCTT CTACTCACGG TTCCGGTAAC CACTCCTACT CCAATAATTC TAATTATGGT GGCAATCGTG GCAACCGTGG CAATCGTGGT CGTGGCCGTG GCGGTCGCGG ATATCGAGGT CGTGGAGGTC GTTTCTACAA CAACAATTAT TGGCAGCCTC CTTATCCATC ATGGCCTTCT CCTCCTTATC ACAATATGCT TCAACCATCC TCGCATACTC CCCTGGGAAC GAAAACAGAT TGCCTCATAG GTCCATGTCT CCATAAAGAT GCAAATAAAT TACCGGTACA GATAAAAGAT TTCTTTGGGA GAGGAAAACA TATGGCTCCA GAAGCACAGA ATTGGATCGT ACCTCTTTCT TCTTGGATAA ATTCGGCTTT CTCTTCTAAT TCGGATAACA CCTACAGAGC AGGATACCAA GAGTAAGTTA ACCGGAGAAG AAAGAT 
Length586
Protein Sequence
Protein Residue
Map Locationscaffold_8: 10306150.. 10306735
Download Sequence
A.thaliana
AGI-codeAT1G79280.2
Descriptionnuclear pore anchor
TAIR curator summaryEncodes a 237-kDA protein with similarity to vertebrate Tpr, a long coiled-coil proteins of nuclear pore inner basket filaments. It is localized to the inner surface of the nuclear envelope and is a component of the nuclear pore-associated steps of sumoylation and mRNA export in plants. Mutations affect flowering time regulation and other developmental processes. Probably acts in the same pathway as ESD4 in affecting flowering time, vegetative and inflorescence development.
Alias[AtTPR][NUA][TRANSLOCATED PROMOTER REGION][nuclear pore anchor]
Gene coexpression
MR
MR Locus Description
7.4162 Ahg923548
9.79796 Ahg920106 nudix hydrolase homolog 26
10.4881 Ahg931091
10.4881 Ahg930762
11.3137 Virus1678
12.3693 Virus0515
14.6969 Ahg943665 phytochrome-associated protein phosphatase type 2C
16.5227 Ahg344317
16.9115 Ahg908221 Carbohydrate-binding X8 domain superfamily protein
19.6214 Ahg942415
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression