| Annotation |
|---|
| Description | jgi|Araly1|952099|scaffold_37500002.1 |
| Sequence |
TAGAAAACTC ACCTCGCTTG AACAATGGAA TTCACTGTCA GGGATTCGGG AAACAATGAC GGCGGAGTTG CCCTAACATT TGGAGAAAAT CTAAATCGCG TCCATCAGCT GCTTGCTTAC GAAGAGAAAT TTCTACTAAT ATTGATTTCT TACCTTTTTT CTACGATTTT GGCTGTAGGG AAGGTTGAGC GTGAGATTTC CGTGTCCGAG GTTATGGAAA CACAGAAGAA CTGCGATAGT TGTTGCCTTG TTGTACAAGA CGAAGCCGTG AAAGCTGTAG CTGCGGCAAT TCTAAGGTCA AGGGTTGGAC TAGGAAGGCC ACAACAACCA TCTGGTTCCT TTCTTTTCCT CGGTCCAACT GGTGTTGGTA AAACTGAGCT GGCTAAGGCT CTTGCTGAGC AACTCTTTTA CGATGAAAAC CTACTCGTTA GGCTTGATAT GTCGGAGTAT ATTGATAGAT ACACTGTTAG TAAACTTATA GGGGCACCAG CTGGGTACAT TGGTCATGAA GGTGGACAAC TAACCGAACC CGTGAGGAGA CGACCTTACT GTGTTGTACT ATTTGATGAA GTTGAAAAGG CCAATGTTAC TGTATTCAAC ACGCTAGTTC AAGTGTTAGA AGACGGGAGA TTAACCGATT CGCATGGGAG GACAGTCGAT TTCAAAAACA CAGTGATCAT AATGACTTCT AACCTTGGTG CTGACCACCT TATTTCAGGG CTTACTGGTG AAGTGACAAT GCAAGTGGCT CGAGACAACG CAATGAAAGA GGTGAAAAAA CATTTCAGGC CAGAGCTGTT AAACAGATTG GATGAGATTG TGATGTTTCA TCCTTTGTCC CACGAGCATT TGACAAAAAT TGTTCAACTC CAAGTGAATA ATGTTGCTAA TCGTCTTGCT GAGAAAGGTG TATCTATGAC TGTATGCATT GGACTACATT TTAGCAGCGA GTTACGACTC GAGAGGAAAG TGGTCACAGA TATATCAATG ATGATTGTAC GAGAAGAAAT CGATGACGAC TCCATTGTGT GCATTGATGT AAACGTGGAT AAAACTGATC TTGTCTACCA AATAGATGAG AATGTGGTTG CGAAGAAGAC AGAGCAAACG TCAGATGTTG TGATTCATTC ACGGAATAAG AGGGGAAGAA GCAATGAAGA AACTTTAACC AAAAAAATAA AAAGTGAAGT CATAGTGATA GATTGAAGAA TGATCAAGGA TTGAAAGT |
| Length | 1228 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_375: 5207.. 8027 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G14670.1 |
| Description | casein lytic proteinase B2 |
| TAIR curator summary | This locus was originally annotated as encoding ClpB2 (also referred to as Hsp92.7), which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. However, according to Lee et al. (2007, Plant Journal, 49:115-127), there is no evidence for expression of an appropriate-sized mRNA from this locus. Re-annotation of the genome indicates that this locus potentially encodes a 68.8-kDa protein, containing only the N-terminal two thirds of the originally predicted open reading frame. This locus contains a 626-bp deletion in WS ecotype compared with the Col ecotype, which eliminates residues 1-86 of the predicted protein. |
| Alias | [CLPB2][casein lytic proteinase B2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 13.1909 |
Ahg949314 | |
| 15.0997 |
Ahg471403 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| 16.4317 |
Ahg318931 | Receptor-like protein kinase-related family protein |
| 18.5472 |
Ahg332869 | Integrase-type DNA-binding superfamily protein |
| 20.9762 |
Ahg330001 | Protein of Unknown Function (DUF239) |
| 21.4243 |
Ahg917024 | |
| 25.4558 |
Ahg949974 | |
| 35.2987 |
Ahg930584 | |
| 35.2987 |
Ahg950610 | |
| 47.9166 |
Ahg905435 | F-box associated ubiquitination effector family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
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| The four seasons |
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| Growth Chamber expression |
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