| Annotation |
|---|
| Description | jgi|Araly1|312200|fgenesh1_pm.C_scaffold_1000980 |
| Sequence |
ATGGCTGCTT CAGGACCAAA AAGCTCAGGT CCCAGAGGTT TTGGACGACA ACCAACAGTA GGAAGTGCTC AGAAAAGAAC TCAGAAGAAG AATGGTGAAA AAGATAGTAA TGCCACTTCT ACAGCAACAA ACGAGGTTTC AGGGGTTACT AAGTTGCCCG AAGCTAAAGC GGATGTACAG AAACAAGGCT CTGTTGTTTT TAATGAGAGG AATGTGTTAG ATAAGTCGGA TATTGAGGAT GATGCTTTGT TAGAAAGAAA GTTAAAACTT GAAAGAGAGA ATCTTCGTAG GAAGGAAATA GAAGCGCTTG CAGTAGAACA TTTGGCGAGA GGTGATAGAA TGTTTGTGTA TCCCGTTATT GTGAAACCCG ATGAAGACAT AGAAGTGTTT CTCAACAGGA ATCTGTCAAC TCTGAAGAAC GAACCAGATG TTTTGATCAT GGGGGCGTTT AACGAATGGA GATGGAAGTC TTTCACGAGG AGATTGGAAA AGACATGGAT CCATGGAGAT TGGTTGTCAT GTCTCCTTCA TATCCCCAAA GAAGCTTATA AGATGGACTT TGTGTTTTTC AATGGGCAAA GTGTATATGA CAACAATGAC TCAAAAGATT TCTGTGTAGA GATAAAAGGT GGGATGGATA AAGTTGACTT TGAGAATTTT CTTCTAAAAG AGAAATTGCG AGAGCAAGAG AAGTTAGCCA AGGAAGAAGC TGAGAGGGAG AGGCAAAAAG AAGAGAAGAG GAGAATTGAA GCTCAAAAGG CTGCAATTGA AGCTGATAGA GCACAAGCTA AGGCGGAGAC TCAGAAGAGA CGTGAATTGC TTCAACCGGC TATTAAGAAG GCTGTAATCT CGGCTGAGAA TGTTTGGTAC ATTGAGCCGA GTGATTTCAA GGCTGAAGAT ACAGTGAAGC TATATTACAA TAAAACGTCA GGTCCTCTGG CTAATTCCAA AGAACTCTGG TTACATGGAG GGTTTAATAA TTGGGTTGAT GGATTATCTA TCGTTGTAAA GCTTGTTGAT GCTGAGTTAA AGGATGATGA TCCAAAGAGT GGAAATGATG ATTCAAAGAG CGGAAATTGG TGGTTCGCTG AAGTTGTAGT GCCTGCCAGT GCTCTAGTCA TTGACTGGGT CTTTGCTGAT GGACCGCCTA AAGGAGCGGT TCTGTATGAC AATAATTTTT ACCAAGACTT CCACGCACTT GTTCCTCGAA AAACTCCTGA AGAACTTTAC TGGTTAGAGG AAGAAAATAT GATTTTTAGA AAACTTCAGG AGGAGAGGCG GTTAAAAGAG GAAGTTATGC GTGCCAAGAT GGAAAAGACA GCTCGCTTGA AAGCCGAAAC TAAGGAAAGA ACACTTAAAA AGTTTCTGCT ATCCCAGAAA GACGTGGTTT ACACTGAGCC TGTAGAGATT CAAGCAGGAA ACCCTGTGAC TGTTTTATAC AATCCTGCAA ACACGGTTTT GAATGGAAAG CCTGAAGTTT GGTTTAGAGG CTCTTTTAAT CGTTGGACTC ACCGCTTGGG CCCTTTGCCA CCTCAGAAAA TGGAAGCAGC AGATGATGGA AGCTCACACA TGAAGACTAC GGCTAAGGTC CCATTGGATG CTTACATGAT GGACTTTGTG TTCTCTGAGA AAGAGGATGG CGGAATATTC GATAACAAAA ATGGTCTGGA TTACCATTTA CCGGTTGTGG GAGGTATTTC AAAGGAACCA CCATTGCACA TTGTTCATAT TGCTGTTGAA ATGGCACCCA TCGCAAAGGT TGGAGGTCTA GGTGATGTCG TCACTAGTCT ATCTCGCGCT GTTCAAGAAT TAAACCATAA TGTGGACATC ATTTTTCCAA AGTATGATTG CTTAAAGCAC AACTTTGTGA AGGACTTGCA ATTCAACAGA AGCTATCACT GGGGAGGAAC CGAAATAAAA GTTTGGCATG GAAAAGTAGA AGGCCTTTCT GTTTACTTCT TAGATCCACA AAATGGATTG TTTCAGCGAG GATGTGTTTA CGGTTGTGCA GATGATGCAG GAAGATTCGG TTTCTTCTGT CATGCGGCTC TTGAATTTCT TCTCCAAGGA GGTTTCCATC CAGACATCCT TCACTGTCAC GACTGGTCTA GTGCTCCGGT TTCATGGTTA TTCAAGGATC AATACACGAA TTACGGTTTA ATTAAAACCC GTGTTGTCTT CACAATTCAT AATTTGGAAT TTGGAGCAAA TGCCATTGGT AAAGCAATGA AATTTGCAGA CAAAGCTACA ACGGTTTCGC CAACCTATGC TAAGGAAGTT GCTGGAAACT CGCTAATCTC TCCTCATTTA TACAAGTTTC ACGGAATCAT AAACGGGATC GACCCAGATA TATGGGATCC ATATAACGAT AACTTTATTC CCGTACCTTA TACTTCAGAG AACGTTGTAG AAGGCAAAAG AGCAGCCAAG GAAGAATTGC AAAACAGGCT TGGACTAAAG AGTGCCGATC TTCCAGTAGT AGGAATTATT ACGCGCTTAA CACACCAGAA GGGAATACAT TTGATCAAGC ACGCTATTTG GCGTACCTTG GAACGGAATG GACAGGTTGT CTTGTTAGGT TCAGCTCCAG ATCCTCGGAT CCAAAATGAT TTTGTAAACT TGGCAAACCA ATTGCATTCT TCTCATGGTG ACCGAGCTCG GCTTGTTCTA ACCTACGATG AACCTCTTTC CCATTTGATT TACGCTGGGG CTGACTTTAT TCTTGTACCG TCAATATTTG AGCCGTGTGG ACTGACACAG CTCATAGCCA TGAGATACGG TGCTGTTCCT GTTGTTAGAA AAACTGGAGG ACTCTTTGAC ACAGTATTTG ATGTTGACCA CGATAAAGAA AGGGCACAAG CTCAAGTTCT AGAACCTAAT GGCTTCAGCT TCGACGGGGC TGATGCTCCT GGTGTTGATT ATGCTCTCAA TAGGGCGATA TCGGCGTGGT ACGATGGTAG AGAGTGGTTT AACTCGCTGT GCAAGACGGT GATGGAGCAA GACTGGTCAT GGAACCGTCC TGCACTTGAA TATCTTGAGC TTTATCACTC TGCACGCAAG TGA |
| Length | 3063 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 4503573.. 4507871 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G11720.2 |
| Description | starch synthase 3 |
| TAIR curator summary | Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD). |
| Alias | [ATSS3][SS3][starch synthase 3] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.12311 |
Ahg492978 | NAD(P)-binding Rossmann-fold superfamily protein |
| 4.58258 |
Ahg945103 | phosphofructokinase 1 |
| 5.65685 |
Ahg483982 | chlororespiratory reduction 6 |
| 5.65685 |
Ahg474906 | Pentatricopeptide repeat (PPR) superfamily protein |
| 9.11043 |
Ahg935565 | |
| 9.53939 |
Ahg471438 | vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) |
| 10.6771 |
Ahg473472 | UDP-Glycosyltransferase superfamily protein |
| 14.2829 |
Ahg941659 | Glyceraldehyde-3-phosphate dehydrogenase-like family protein |
| 16.2788 |
Ahg925420 | plastid transcriptionally active 4 |
| 16.9706 |
Ahg473852 | Protein of unknown function (DUF3223) |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|