| Annotation |
|---|
| Description | jgi|Araly1|315469|fgenesh1_pm.C_scaffold_2000502 |
| Sequence |
ATGATAACTG CAGCTCTACA CGAACCTCAG ATTCACAAAC CAACCGATAC ATCCGTCGTC TCCGGCGATA TGCTTCCTCC TCCTCCTCCT CCACCTCCTA TGCCTCGCAT TTTCCGGTCA AAGCTTCCGG ACATTGACAT CCCTAACCAC CTACCTCTCC ACACTTACTG CTTCGAAAAA CTCTCATCTG TTTCCGACAA GCCTTGTCTC ATTGTTGGCT CCACCGGAAA AAGCTATACC TACAGCGAAA CACACCTAAT CTGCCGGAGA GTCGCTTCCG GATTATACAA GTTAGGTATC AGAAAAGGTG ACGTCATCAT GATCCTTCTC CAAAACTCAG CCGAGTTCGT CTTCTCCTTC ATGGGTGCTT CCATGATCGG AGCCGTCTCA ACCACCGCAA ACCCTTTCTA CACTTGTCAA GAGATTTATA AACAGCTTAA ATCTTCCGGA GCTAAACTCA TAATCACTCA CTCTCAATAC GTCGATAAAC TTAAAAACCT CGGAGAAAAC CTCACGGTGA TCACCACCGA TGAACCAACA CCGGAGAATT GTCTACCATT CTCAACACTC ATCACCGACG ACGAGACAAA CCCATTTCAA GAAACCGTAG ATATTGGCGG TGACGATGCG GCGGCGCTTC CATTCTCATC GGGAACAACA GGGTTACCAA AAGGAGTTGT TTTGACACAC AAGAGCTTAA TCACAAGCGT TGCACAACAA GTAGATGGAG ATAACCCAAA TCTTTACCTC AAATCAAACG ACGTCCTACT CTGCGTTTTA CCACTTTTCC ATATCTACTC TCTTAATAGC GTCCTCCTCA ATTCACTCCG ATCCGGTGCC ACGGTTCTTT TAATGCATAA GTTTGAGATC GGTGCGCTAT TGGATCTTAT TCAAAGACAT AGAGTGACAA TAGCGGCGCT TGTACCGCCG CTAGTGATCG CTCTAGCTAA AAACCCGACT GTTAACTCTT ATGATCTCTC CTCCGTTAGA TTGGTTCTCT CCGGTGCAGC TCCTTTAGGT AAAGAACTTC AAGATAGTCT CCGTCGCCGT CTCCCTCAAG CCATCCTTGG CCAGGGATAT GGTATGACGG AAGCAGGACC AGTGTTGTCA ATGAGCCTTG GGTTCGCTAA AGAACCGATG CCGACAAAAT CAGGTTCATG TGGGACTGTG GTCCGAAACG CAGAGCTTAA AGTGGTTCAC CTTGAGACAC GTCTCTCTCT TGGTTACAAC CAACCTGGTG AGATTTGTAT CCGCGGTCAA CAAATCATGA AAGAGTACTT GAACGACCCA GAAGCCACTT CAGCAACAAT AGACGAAGAA GGTTGGCTTC ACACAGGAGA CATTGGGTAT GTTGACGAAG ATGATGAGAT CTTCATTGTT GATCGACTTA AAGAAGTCAT CAAGTTCAAA GGCTTTCAGG CAAAACAGGT CCCTCCGGCT GAGCTAGAGA GTTTGCTAAT CAATCATCAT TCAATTGCGG ATGCTGCTGT TGTTCCGCAA AACGATGAAG TCGCTGGGGA AGTTCCGGTG GCTTTCGTGG TGCGATCAAA TGGAAATGAT ATCACTGAAG AAGATATTAA AGAATATGTT GCCAAACAGG TGGTGTTCTA TAAGAGATTG CACAAGGTTT TCTTTGTTGC TTCCATTCCT AAATCTCCTT CTGGAAAAAT TCTGAGAAAG GACCTCAAAG CTAAACTTTG TTGA |
| Length | 1704 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_2: 7513272.. 7517312 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G65060.1 |
| Description | 4-coumarate:CoA ligase 3 |
| TAIR curator summary | encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate. |
| Alias | [4CL3][4-coumarate:CoA ligase 3] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3 |
Ahg917976 | Embryo-specific protein 3, (ATS3) |
| 4 |
Ahg919306 | UDP-Glycosyltransferase superfamily protein |
| 4.58258 |
Ahg485933 | Chalcone-flavanone isomerase family protein |
| 6.32456 |
Ahg485476 | flavanone 3-hydroxylase |
| 6.32456 |
Ahg493342 | UDP-Glycosyltransferase superfamily protein |
| 7.74597 |
Ahg487705 | flavonol synthase 1 |
| 8.48528 |
Ahg488219 | Chalcone and stilbene synthase family protein |
| 10.583 |
Ahg492036 | UDP-Glycosyltransferase superfamily protein |
| 10.9087 |
Ahg488566 | UDP-glucosyl transferase 78D3 |
| 11.4018 |
Ahg487319 | Chalcone-flavanone isomerase family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
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| Growth Chamber expression |
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