| Annotation |
|---|
| Description | jgi|Araly1|488219|fgenesh2_kg.6__1353__AT5G13930.1 |
| Sequence |
AAATACACCT AACTTGTTTA GTACACAACA ACATCAAACT CTAATAAACC CAAGTTGGTG TGTAATATAA TGGTGATGGC TGCAGGAGCG TCTTCGTTGG ATGAGATCAG AAAGGCTCAG AGAGCTGATG GACCTGCAGG GATCTTGGCT ATTGGCACGG CTAACCCTGA GAACCATGTG CTTCAGGCGG AGTATCCTGA CTACTACTTC CGAATCACCA ACAGTGAACA CATGACCGAC CTCAAGGAGA AGTTCAAGCG CATGTGCGAC AAGTCGATGA TTCGGAAACG CCACATGCAT CTGACAGAGG ACTTCCTCAA GGAAAACCCA CACATGTGCG CTTACATGGC TCCTTCTCTA GACACCCGAC AGGACATCGT TGTGGTTGAA GTCCCTAAGC TAGGCAAAGA AGCGGCAGTG AAGGCCATCA AGGAGTGGGG CCAGCCCAAG TCAAAGATCA CTCATGTCGT CTTCTGCACT ACCTCTGGCG TCGACATGCC TGGTGCTGAC TACCAGCTCA CCAAGCTTCT TGGTCTCCGT CCTTCCGTCA AGCGTCTCAT GATGTACCAA CAAGGTTGCT TCGCCGGCGG CACTGTCCTC CGTATCGCTA AGGACCTTGC CGAGAACAAC CGCGGAGCTC GTGTCCTTGT CGTCTGCTCT GAGATCACAG CTGTCACCTT CCGTGGCCCC TCTGACACCC ACCTCGACTC CCTCGTCGGT CAGGCTCTTT TCAGTGACGG CGCTGCCGCA CTCATCGTGG GCTCGGACCC TGACACATCT GTCGGAGAGA AACCCATCTT CGAGATGGTG TCCGCCGCCC AGACCATCCT GCCAGACTCT GATGGTGCCA TAGACGGACA CTTGAGGGAA GTGGGTCTCA CCTTCCATCT CCTCAAGGAT GTCCCCGGCC TCATCTCGAA GAACATTGTT AAGAGTCTAG ACGAAGCGTT TAAACCTTTG GGGATTAGTG ACTGGAACTC CCTCTTCTGG ATAGCCCACC CTGGAGGTCC AGCGATCCTA GACCAGGTGG AGATAAAGCT AGGACTAAAG GAAGAGAAGA TGAGGGCGAC ACGTCACGTG TTGAGCGAGT ATGGAAACAT GTCTAGCGCG TGCGTTCTCT TTATACTAGA CGAGATGAGG AGGAAGTCAG CCAAGGATGG TGTGGCCACT ACAGGAGAAG GGTTGGAGTG GGGTGTCTTG TTTGGTTTCG GACCAGGTCT CACTGTTGAG ACAGTCGTCT TGCACAGCGT TCCTCTCTAA TAAGAACGCT TTCCTTCTAT CTGCCTACCT ACACTACGCA AAACTTTAAT CCTGTCTTAT GTTTTATATA ATATAATCTA TGTTTATGCA ATAATTAAGG AAGAATTCAT TTGATGTGAT ATGTGATTTG AAATGTGCTG GACAGGTCTA TTCGACTATT TTTGTACCTT TTGTTTGTGT CTTTTTACAA TATTAAATCT ACGGGTCTTG AATGACATGA AATCTTTGTT |
| Length | 1490 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 5416779.. 5418357 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G13930.1 |
| Description | Chalcone and stilbene synthase family protein |
| TAIR curator summary | Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism. |
| Alias | [ATCHS][CHS][TT4][CHALCONE SYNTHASE][TRANSPARENT TESTA 4] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg487319 | Chalcone-flavanone isomerase family protein |
| 2 |
Ahg485476 | flavanone 3-hydroxylase |
| 3.4641 |
Ahg485933 | Chalcone-flavanone isomerase family protein |
| 4.89898 |
Ahg482690 | PHE ammonia lyase 1 |
| 5.74456 |
Ahg326139 | UDP-glucosyl transferase 78D2 |
| 6 |
Ahg488566 | UDP-glucosyl transferase 78D3 |
| 7.07107 |
Ahg919306 | UDP-Glycosyltransferase superfamily protein |
| 8 |
Ahg487705 | flavonol synthase 1 |
| 8.24621 |
Ahg481961 | cinnamate-4-hydroxylase |
| 8.48528 |
Ahg315469 | 4-coumarate:CoA ligase 3 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|