| Annotation |
|---|
| Description | jgi|Araly1|317081|fgenesh1_pm.C_scaffold_3000097 |
| Sequence |
ATGGATGGAT CAGGCGGTAG AAGTGGGGTA GAATCGATTC TACCAAATTA CAAGCTTGGG AGAACTCTTG GTATTGGTTC CTTTGGTAGG GTGAAGATAG CTGAGCACGC ATTGACAGGA CATAAAGTTG CAATCAAGAT CCTCAATCGT CGCAAAATCA GGAACATGGA GATGGAGGAG AAAGTGAGGA GAGAGATCAA AATCTTGAGA CTATTTATGC ATCCTCACAT CATCCGTCTC TATGAGGTTA TAGAGACTCC GACAGATATT TATCTTGTCA TGGAGTATGT GAACTCTGGT GAGCTATTTG ACTACATTGT AGAGAAGGGT AGATTGCAGG AGGATGAGGC GAGGAACTTC TTTCAGCAGA TAATATCTGG AGTGGAATAC TGCCATCGAA ATATGGTGGT TCACAGAGAC CTCAAGCCTG AAAACTTGCT TTTGGATTCT AAATGCAATG TAAAGATTGC TGATTTTGGC CTGAGCAATA TAATGCGAGA TGGTCATTTT TTGAAGACAA GTTGTGGAAG TCCAAATTAT GCGGCTCCAG AGGTCATTTC GGGAAAATTA TATGCTGGGC CTGAAGTAGA TGTCTGGAGC TGTGGTGTGA TACTCTACGC TCTTCTCTGT GGGACTCTTC CATTTGATGA TGAAAACATT CCCAACCTTT TTAAGAAGAT AAAGGGAGGG ATATATACAT TACCTAGCCA TTTATCTGCT GGTGCTAGAG ATTTGATCCC CCGGATGCTT GTAGTTGACC CCATGAAACG AGTAACCATC CCTGAGATCC GGCAACACCC TTGGTTCCAA GCTCACCTTC CGAGGTATTT AGCTGTTCCT CCTCCAGATA CAGTGCAACA GGCGAAAAAG ATTGACGAGG AGATTCTCCA AGAAGTTATC AATATGGGAT TTGACAGAAA CCACCTCATT GAATCTCTCC GCAACCGGAC CCAGAATGAT GGCACTGTGA CATACTATCT GATACTGGAC AATCGTTTCC GTGCCTCTAG TGGTTATCTC GGGGCCGAGT TTCAAGAGAC CATGGAAGGT ACTCCCCGTA TGCATCCAGC AGAAAGTGTC GCTTCACCTG TTAGCCATCG GCTTCCAGGA TTGATGGAAT ATCAAGGAGT TGGCTTGAGA TCTCAATACC CTGTTGAAAG AAAATGGGCT CTTGGACTTC AGTCTCGGGC TCATCCCCGT GAAATAATGA CGGAAGTCCT GAAAGCCCTG CAAGATTTGA ATGTGTGTTG GAAGAAGATA GGGCACTACA ACATGAAGTG CAGATGGGTT CCTAACAGCA CAGATGGTAT GCTCAGTAAC TCGATGCACG ATAGCAACTA CTTTGGAGAC GAGTCCAGCA TAATAGAGAA CGATGCAGCT GTTAAGTCGC CGAATGTTGT CAAGTTTGAA ATTCAGTTGT ATAAAACTCG GGACGACAAG TATCTACTGG ATTTGCAGAG AGTACAAGGT CCTCAGTTCT TGTTCTTGGA TCTCTGTGCT GCTTTTCTTG CTCAGCTCCG AGTCCTCTGA |
| Length | 1530 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 372241.. 374819 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G01090.2 |
| Description | SNF1 kinase homolog 10 |
| TAIR curator summary | encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase |
| Alias | [AKIN10][KIN10][KIN10][SNRK1.1][SNF1 kinase homolog 10][SNF1-RELATED PROTEIN KINASE 1.1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 9.59166 |
Ahg488545 | binding partner of acd11 1 |
| 10.9545 |
Ahg493298 | Cysteine proteinases superfamily protein |
| 12.083 |
Ahg473785 | RAB GTPASE HOMOLOG B18 |
| 16.1245 |
Ahg935564 | |
| 17.6635 |
Ahg929022 | histone acetyltransferase of the CBP family 5 |
| 22.6274 |
Ahg490214 | glucan synthase-like 5 |
| 22.9783 |
Ahg488259 | Proteasome component (PCI) domain protein |
| 25.8844 |
Ahg491382 | Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein |
| 26.4953 |
Ahg947365 | PRP38 family protein |
| 36.9865 |
Ahg898366 | DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
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| The four seasons |
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| Growth Chamber expression |
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