| Annotation |
|---|
| Description | jgi|Araly1|898366|Al_scaffold_0005_2332 |
| Sequence |
ATGGCACATC AACAATCTTC CCGACTCAAT CGTCTCCTTA CTTTGTTGGA CACTGGTTCA ACTCAAGCTA CTCGGCTAAC TGCAGCCAAG CAGATCGGGG ATATTGCAAA GTCTCATCCT CAGGACTTGA GCTCTCTTCT GAGAAAGGTT TTGCATCACC TCCGTAGTAA AAAGTGGGAT ACGAGGGTTG CTGCTGCTCA TGCTATTGGT GCCATTGTTT TGAATGTCAA ACATCCTTCA TTGAGTGAAC TGTTAAATTC TTTAGCAACG AAGTTGGGTG AGGCCGGGAT ATCTGATAAT GTAGATGAAG TGGTGGCTTT GCGCAATCTT CAGTCCAAGA TTCTGGCAAA TGCACCCTTT AGAAGCTTTG AGATGAATAA GGTTTTAGAG TTTGGCGCTT TGTTGGCATC TGGTGGACAG GAGTACGACA TTTTGAATGA CAATTCCAAG AATCCAAAGG ATCGAGTGGC TCGTCAGAAA AAGAATCTCC GACGACGTCT AGGTTTGGAC ATGTGCGAGC AGTTCATGGA TGTCAATGAA ATGATTAGAG ATGAGGATCT TATTGAGCAG AAGTCCAATG TTCCTGCGAA TGGGGTTGGG AACAGATTAT ACGCAAACTA TTCTCCACAT CATATTCAAC AATTCGTTTC AAGGATGGTT CCCCGTGTCA ATTCTAGGAG GCCAAGCGCA AGGGAATTGA ATTTACTGAA ACGAAAAGCA AAAATAAGCT CAAAAGATCA AGCTAAAGGT AGCTGCGAAG TAGCAGATGT TGAGATGCCA TCGTCTCATG CCTCAACCTC AAAAAGAATA TCGTCCGACT CATTGGACTC GAACAAGGCG GACATTGGTA ATGAGGATGA TATCGAGCCT GATGGGGATG GAAAATGGCC TTTCCATAGT TTTGTTGAGC AACTTATTCT TGACATGTTT GACCCTGCAT GGGAGATCCG CCATGGAAGT GTAATGGCTC TCAGAGAAAT ATTAATGCTT CATGGTGGTT CTGCTGGAGT GTCAACAGAA GAGTTTAGCT CAGATAATGG GTTTGAGTTG AAAGAAGTCT TGAACAAAGT AACACGAGAA AGAGAAATCG ACTTAAATAT GCAGGTTTCA GAAAATGAGC TGGAGCCACT TCGGAAAAGA CCTAAGATTG AAGATCCATC AAAATCATTT ATTGATAACA CTGTTTTAGA AGTTATTGGG GGTTACTCTG ATATTAATGT TAAAGATGAA GATGCTGAGT TTTTACTGCC ACCAGTGAAG GTCAATGGTC AAACTGACTC TAATTCTACG AAAGTGGAAC CTCAATCTTC TATGGATGAT TCGTCATCTC ACTCTGAAAT AAACCATGTG GCAGAGGTTA ACAATCATTT TGAAGATAAG AGTTTTATTG AGGAAGCAGT TATACCTAAG CATCAGGAAG AAAATCTCGA AGTGTTGGAT TTGGTTAAAC AAGCTAGGCA TTCTTGGATA AAAAATTTTG AATTTCTCCA GGATTGCACC ATTCGCTTCT TATGTGTGCT TTCACTTGAC CGATTTGGGG ATTATATTTC TGATCAGGTA GTTGCTCCTG TGCGGGAAGC TTGTGCCCAA GCACTTGGTG CTACTTTCAA ATACATGAAT CCCTCGGTGA TTTATGAGAC ATTAAATATC TTGCTTCAGA TGCAGCGCCG GCCTGAATGG GAAATTCGTC ATGGAAGTCT TTTGGGCATC AAGTACTTGG TTGCTGTGCG ACAGGAAATG CTCCAAGATT TGCTTGGCTA TATTCTTCCG GCGTGTAAAG CAGGGTTGGA GGATTCTGAC GATGATGTGC GAGCAGTTGC TGCTGATGCT CTTATACCGG CAGCAGCTGC TATTGTCTCT TTGAGAGGAC AGACATTACT TTCCATTGTC ATGCTACTGT GGGATATCTT GCTTGAGTTG GATGACTTAA GTCCATCAAC CAGCAGTGTT ATGAACCTCC TGGCAGAAAT CTATTCTCAA GATGACATGA CCCTGGTGAT GCATGAGGAA TTATCACTGG GGGAGGAACA AAATATTGAC CTCAATGAAA TGGGTCCTAT CGAGAGTATT GGAGAAAGAA GAGATGTCAA GGAAAGCCCT TATGCATTAT CAGGTTTAGC CCCTAGGTTG TGGCCATTTA CGAGGCACGA CATTACATCA GTTCGATTTT CTGCTATTCG AACTCTGGAA CGACTTCTTG AAGCTGGATG CAGAAAGAAC ATTTCTGAGC AGTCTAAAAG TTCTTTTTGG CCATCTTCTA TTTTAGGGGA CACCCTGAGA ATCGTCTTTC AAAATCTTTT GCTTGAATCA ACTGAGGAGA TTCTGGAGTG TTCGGAGAGA GTGTGGAGAC TATTGGTTCA GTGCCCAGTG GATGATTTAG AAGACGCTGC AAAATTCTAT ATGGCTTCGT GGATAGAACT TGCAGCTACT CCTTATGGCT CCACATTGGA TGCTACGAAA ATGTTTTGGC CAGTAGCTCC CCCTCGTAAG AGTCATTTCA AAGCTGCTGC TAAGATGAAA GCTGTCAAAC TTGAGAACGA AGCTTCTAGC ATTCTGGGAT TTGATTATGC AAGAAGTTCT GCTTCCCTCG AAAAACATGA AGATGCTTCT GCCAGGTCCA CTAAAATTAT CGTCGGCTCT GATATGGAAA TGTCAGTGAC CCGCACCCGG GTAGTTACAG CATCTGCATT AGGTATCTTT GCATCCCGGT TGCGAGAGGG TTCAATGCAG TTTGTGGTAG ATCCACTGAG TAGTACTCTT ACTTCTCTGT CCGGTGTTCA GCGCCAGGTT GCGTCCATTG TGCTCATCTC TTGGTTCAGA GAAACAAAAT GCAAGGCCCC TTCTGATGGA AGTGGAAGTT TGCCTGGTTT TCCTAGTCCT CTTAAAAAAT GGCTGCTAGA TTTGTTAGCT TGCTCAGACC CTGCTTTCCC TACTAAAGAC ATACTTCTTC CTTATGCTGA GCTCTCAAGA ACATACACGA AAATGAGGAA TGAAGCTTCT CAGTTTTTGC ATACAGTTGA AACCTGCCAT TGTTTTGATA AGTTATTATC AACGAATAAA CTCAATGTGG AGAGCGTGAC TGCCGATGAG ACAATTGACT TTGCATCAAC ACTAGCTTTG TGGAACAAAG AAAGTGTTGG AAATGAATCC TTAGAAAAGC AAGTTTTTGA AGATGTGGAG TCATCTAGGC AACAGCTATT AAGTACTGCT GGTTATTTAA AGTGTGTTCA GAGTAATCTA CATATCACAG TCACCTCCCT GATCGCTGCT GCAGTTGTTT GGATGTCAGA ATTTCCTGCT AGACTTAATC CAATCATCTT GCCGCTGATG GCTTCGATTA AAAGAGAGCA GGAACAAATA CTACAGCAAA TAGCTGCTGA GGCTCTTGCA GAGCTCATTG CATACTGCGT AGATCGGAAG CCAAGCCCCA ATGACAAGTT AATCAAGAAT ATCTGTAGCT TGACGTGCAT GGATCCTAGC GAAACACCTC AAGCTAGCAT CATTAGCTCT ATGGATATCA TTGATGATAT GGATTTTCTG TCCTCGCGGA GTAACGCAGG AAAACAAAAA GCAAAAGTCG TGTTGGCTGG TGGCGAAGAT AGGTCTAAAG TTGAGGGTTT TATCACGAGG AGAGGATCTG AACTCGCGTT GAAGCATTTA AGCTTGAAAT TTGGTGGTTC CTTGTTTGAC AAACTCCCAA AATTGTGGGA GTGCCTCACT GAGGTTCTTG TTCCTGAAAT TCCTGCTGAT CAACAGAATA TTGACCTTAA AATAGAATCT ATTTCGGATC CACAGGTGGT ACGTTCAATA GCACCAGTGA TGGAAGAAAC ACTTAAACCT AGACTACTCA GTCTCCTGCC TTGTATTTTC AAATGCGTTC GCCATTCCCA TGTAGCTGTT AGATTGGCTG CTTCTAGATG TGTTATGACA ATGGCTAAAT CAATGACAAC AAATGTCATG GCAGCAGTAG TGGAAGGTGC TATTCCAATG TTGGGAGATT TGACATGCAT TAATGCTAGA CAAGGCGCAG GAATGCTTAT TGGTTTACTT GTTCAAGGGC TGGGTGTTGA ACTGGTTCCA TATTCTCCTC TATTGGTTGT TCCCCTCCTA AGATGCATGA GCGATGTTGA CAGTTCAGTC AGGCAGAGCG TGACACGTAG CTTTGCTGCC CTTGTGCCTA TGCTTCCATT AGCACGTGGC GCACCCCCTC CTGTCGGGTT GAGCAAGGAT CTATCTAGCA ATGCAGAGGA TGCAAAATTT TTGGAACAGC TACTTGACAA CTCCCATATA GATGATTACA AGCTTTGCAC TGAGCTAAAA GTTCAATTAA GAAGGTATCA ACAAGAAGGA ATCAATTGGT TAGGATTCCT GAAGCGTTTT AAGCTCCATG GAATTCTCTG CGATGATATG GGGCTTGGTA AGACGCTTCA AGCATCTGCA ATTGTGGCAT CTGATGCAGC AGAGCGTCGT GGTTCAACAG ATGAACCAGA TGTTTTTCCA TCTATAATTG TTTGCCCTTC AACATTAGTT GGTCATTGGG CATTTGAAAT TGAGAAGTAT ATCGACCTTT CTCTGCTAAG CGTGTTGCAG TATGTTGGCT CTGTTCAAGA CCGTGTTTCT CTCCGTGAAC AGTTCAACAA CCACAATGTC ATTATAACAT CTTATGATGT GGTCCGCAAG GATGTTGATT ATCTGACACA ATTTTCATGG AACTACTGTA TCCTGGATGA GGGGCACATA ATTAAGAATG CTAAATCTAA AATAACTTCA GCAGTAAAAC AATTGAAGGC CCAGCACCGA CTTATCCTTA GTGGAACACC AATACAGAAT AATATCATGG AGCTGTGGTC CCTTTTTGAC TTCTTGATGC CTGGATTTCT TGGGACAGAG AGACAGTTTC AAGCATCTTA TGGAAAACCG TTGCTGGCAG CTAGAGATCC TAAATGCTCT GCTAAGGATG CTGAAGCGGG TGTACTGGCA ATGGAAGCAC TCCATAAGCA GGTTATGCCA TTCTTACTCA GACGTACGAA AGAGGAAGTC CTCTCTGATT TGCCAGAAAA AATCATTCAG GACAGATACT GTGACCTTAG TCCTGTGCAG TTGAAGCTTT ATGAGCAATT TTCTGGTTCA AGTGCTAAGC AAGAAATATC TAGTATCATA AAAGTTGATG GGTCAGCAGA TTCTGGAAAT GCAGATGTTG CGCCAACAAA AGCATCCACA CACGTTTTCC AGGCACTGCA GTACCTGCTT AAACTCTGCA GTCATCCGCT TCTTGTTCTT GGGGATAAGG TTACAGAGCC GGTGGCTTCT GATTTGTCAG CAATGATAAA TGGATGTTCG GATATTATCA CTGAGCTTCA CAAAGTTCAA CACTCTCCAA AGCTTGTTGC TCTTCAGGAA ATTTTAGAAG AATGTGGAAT AGGTTCTGAT GCTTCTAGTT CAGATGGCAC TCTTAGTGTA GGCCAGCACA GAGTTCTGAT ATTTGCACAG CACAAAGCTT TGCTGGATAT CATTGAAAAG GACTTGTTTC AAGCCCACAT GAAAAGTGTC ACATATATGC GACTAGATGG TTCAGTTGTA CCGGAGAAAA GGTTTGAGAT TGTGAAGGCC TTTAATTCAG ATCCTACAAT TGATGTTCTG CTCCTGACAA CACATGTTGG TGGGCTTGGG TTGAACCTGA CCTCTGCTGA TACACTTGTA TTTATGGAGC ATGATTGGAA TCCAATGCGT GATCATCAGG TGAACAAACT GTGGCAGGCG ATGGACAGAG CGCATAGATT GGGACAGAAG AGAGTTGTAA ATGTACACCG TCTGATAATG CGTGGCACAC TTGAAGAGAA AGTGATGAGT CTCCAAAGAT TCAAAGTGTC GGTTGCCAAT ACAGTAATCA ATGCTGAGAA TGCAAGTATG AAGACAATGA ACACTGATCA GTTGCTCGAC TTATTTGCTT CAGCTGAAAC TTCTAAAAAG GGTGGTGCGT CTTCGAAGAA TGGATCAGAG GAGAATGACC AGATTGCTGG AACTGGAAAA GGACTGAAGG CAATTCTAGG AAACTTAGAA GAACTGTGGG ATCAATCACA GTACACAGAA GAGTACAATC TTAGCCAGTT CTTAGCTAAG CTCAACGGGT AA |
| Length | 6132 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 16006190.. 16017990 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G54280.2 |
| Description | DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases |
| TAIR curator summary | |
| Alias | [ATBTAF1][BTAF1][CHA16][CHR16][RGD3][ROOT GROWTH DEFECTIVE 3] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg899624 | natural resistance-associated macrophage protein 3 |
| 6 |
Ahg924045 | calpain-type cysteine protease family |
| 6.32456 |
Ahg321506 | vacuoleless1 (VCL1) |
| 9.38083 |
Ahg494587 | Calcium-binding EF-hand family protein |
| 11.4018 |
Ahg487631 | dentin sialophosphoprotein-related |
| 11.4891 |
Ahg487064 | Pentatricopeptide repeat (PPR) superfamily protein |
| 13.7477 |
Ahg477999 | acyl-CoA dehydrogenase-related |
| 15.8745 |
Ahg929889 | pre-mRNA-processing protein 40C |
| 15.9687 |
Ahg480378 | |
| 19.105 |
Ahg470503 | Helicase protein with RING/U-box domain |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|