| Annotation |
|---|
| Description | jgi|Araly1|322516|fgenesh1_pm.C_scaffold_5000060 |
| Sequence |
ATGGCGATCG ATTGTCTCGT ACTCGGTGCT GGACAAGAGA TTGGAAAGAG CTGTGTGGTA GTGACGATTA ATGGTAAAAG GATAATGTTC GATTGTGGGA TGCATATGGG CTGCGATGAT CACAATCGTT ACCCAGATTT TTCTCTCGTC TCTAAATCCG GTGATTTTGA TAACGCGATC TCTTGTATCA TCATCACTCA CTTCCATATG GATCATGTTG GAGCGCTTCC TTACTTCACG GAAGTTTGTG GGTACAATGG CCCGATTTAT ATGTCGTATC CCACAAAGGC TTTGTCTCCA TTAATGCTTG AGGACTACCG AAGAGTGATG GTTGATAGAA GAGGTGAGGA GGAGCTATTC ACCACTACCC ATATCGCAAA CTGCATGAAG AAAGTAATTG CAATAGATTT GAAGCAAACA ATTCAGGTTG ACGAAGATCT TCAAATCCGT GCCTATTACG CAGGGCATGT CCTTGGAGCA GTGATGGTTT ATGCAAAGGT TGGAGATGCA GCGATTGTGT ACACTGGAGA TTACAATATG ACGACAGATA GACATCTAGG AGCAGCTAAA ATTGACAGAC TCCAGTTGGA TCTTCTCATA TCAGAGTCCA CATATGCAAC TACCATTCGT GGCTCAAAAT ATCCCCGGGA GAGAGAGTTT CTTCAAGCTG TTCATAAATG TGTTGCTGGC GGAGGGAAGG CGCTGATTCC TTCATTTGCT CTTGGAAGGG CTCAGGAACT CTGCATGCTG CTTGATGATT ACTGGGAGCG CATGAATATA AAGGTTCCAA TTTACTTCTC ATCAGGTTTG ACCATCCAAG CAAATATGTA TTACAAAATG CTCATCAGCT GGACAAGCCA GAACGTTAAA GAAAAGCACA ATACACATAA CCCATTTGAT TTTAAGAATG TTAAAGATTT TGATCGATCT CTTATACATG CTCCTGGGCC ATGTGTTCTC TTTGCCACAC CCGGTATGCT TTGTGCCGGC TTCTCACTTG AAGTGTTCAA GCACTGGGCT CCATCTCCCC TGAATCTTGT TGCCTTGCCC GGATACTCTG TGGCTGGAAC AGTTGGGCAC AAACTGATGT CTGGTAAACC CACGACGGTT GATCTCTACA ATGGCACCAA GGTCGATGTC CGTTGCAAGA TACATCAAGT GGCATTCAGT CCTCACACAG ATGCAAAAGG AATAATGGAT CTCACAAAGT TCCTTTCCCC AAAGAACGTT GTACTCGTGC ACGGCGAAAA ACCCAGCATG ATGATTCTTA AGGATAAGAT AACCTCAGAG CTTGACATCC CCTGTTTCGT CCCTGCCAAT GGCGAAACAG TTTCAGTAGC TTCAACCACT TATATAAAAG CAAACGCTTC TGATATGTTC CTTAAAAGCT GCTCCAGCCC GAATTTCAAA TTCTCAAACT CTACTCAGCT CCGTGTTACA GATCAGAGAA CAGCAGACGG CGTTTTGGTC ATAGAGAAGA GCAAAAAGGC AAAGATAGTT CACCAAGATG AAGTCTCTGA GGTGTTACAT GAGAAAAACC ATGTGGTCTC TTTGGCTTAT TGTTGTCCTG TGAAAGTCAA GGGAGAATCA GATAATGATG CTGATCTGAT CAAACAATTG TCTGCAAAGA TCTTGAAGAC AGTGTCTGGT GCTCAGATCC ATGAATCTGA AAACTTTGTG AAGAAGAAAC TGATGTCTTC TTCAGATTCC ACGGCGGCGC GTGATCAACA TGCGCCGCTT CTCCGTTCAC GTCACGACGG ATCTTCTTCT TCTTCTTCTT CTTCATCAAC AGCCCGACCT ACAGCTCTCG CCGTTCTATT AGGCCGGATC ACCGGTCACC GTGCACCGTC GATGCTGGTT AGAGAAACGG CGGCGCGTGC TCTCGAGGAA AGACGAATCG ATTGGGGTTA CTCGAAGCCT GTAGTTGCTG CTGATATACT ATGGAACGCT GCTTTAGTGC TTGCGTCGGC GGTTATGCTT GTCGGTACCG TTGAAGAAAG ACCTAATGAA CCAATTAGGG TTTGGATCTG TGGGTATGGG TTACAGTGTT TGATCCATGT GGTTTTGGTT TGGTCTGAGT ATTGGAGAAG AAACACAACT CGTCGAGCTA GGGATTTGGA GTCTGGTGAT CATGAAGATT ACAGTGAGTA TGATTATGAA CAAGACAGTG ACAATTCAAC AACTTACAGG TTGTCGGTGA TTTTTCTGGC GATTGATGTC TTCTTTGCTA TTTTCTGTGT TGTTTTGGCT TGCCTTGTTG GAATAGCTCT CTGCTGCTGT CTTCCTTGCA TAATCGCTCT TCTTTATGCC GTTGCAGGAA CGGAAGGAGT ATCAGAGGCT GAGCTCGGTG TTCTTCCCCT GTACAAATTT AAGGCTTTCC ATAGCAACGA GAAGAACATT ACCGGACCTG GACTGTTGCA TATGTCTGAG CTCATACGAG GATGGTGCAG AGCTTCATGA |
| Length | 2460 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 371942.. 377315 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G01730.1 |
| Description | cleavage and polyadenylation specificity factor 73 kDa subunit-II |
| TAIR curator summary | a homolog of cleavage and polyadenylation specificity factor that plays an essential role in the development of female gametophyte and embryo |
| Alias | [ATCPSF73-II][CPSF73-II][EDA26][cleavage and polyadenylation specificity factor 73 kDa subunit-II][embryo sac development arrest 26] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.87298 |
Ahg488886 | PRLI-interacting factor, putative |
| 6.9282 |
Ahg487401 | DHFS-FPGS homolog B |
| 9.32738 |
Ahg476255 | Plant protein of unknown function (DUF639) |
| 11.6189 |
Ahg888834 | helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding |
| 14.3527 |
Ahg314341 | protein kinase family protein |
| 14.3527 |
Ahg940081 | Pentatricopeptide repeat (PPR) superfamily protein |
| 18.8944 |
Ahg900811 | GCN5L1 family protein |
| 23.1517 |
Ahg920873 | Pentatricopeptide repeat (PPR) superfamily protein |
| 25.0998 |
Ahg494475 | Disease resistance protein (TIR-NBS-LRR class) family |
| 28 |
Ahg343571 | LOV KELCH protein 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|