| Annotation |
|---|
| Description | jgi|Araly1|347259|fgenesh1_pg.C_scaffold_5000651 |
| Sequence |
ATGGAAAATG CGGTGTGGAA CTTGACAAAG CATTTGGATA CTGTTTCAGA AGCTATTTCT AATGCTAAGA AGCACCTGTG TCACCGGCTC GGCTTCAGAA GAGTTGTTCC TTTGAGGGTG GTGTTAACAA GTTTCAGATA TATGGGACAG GTGGGTTTGG CTCTTGCTAA CATTGGAGAT GATTTTGACG CATTGCATGT TTGGTTTTTG GATTTTTTGA TGGCGAACTT GGGAGGCTTC AAGCAGTATG AGGACAAAGC CAATTCTAGT CATCCTCGCG ATACACATGA TCCTACAGGA GAACCAGAAA CTCTGTGGGG AAGAATTGAT CCGAGGTCTT TTGGTGACCG TGTTGATAAG GGAAAGCCTC AGGAGTTGGA GGATAAACTT AAAATGTATA AGAAGAAGAA GGAACGTGAT GTTGTAGATG ATACTGTTAA TGTTCGGCAG AGTAAGAGGC GACGTCTTAG GGAAGAGAGT GTGCTCACTG ATGATATGGA TGCTGCGGTT TATCAGCCCA AGAGTAATGA GACTAGGGCT GCTTATGAGG CTATGCTTTG TCTTATTCAG CATCTGTTGG GTGGGCAACC TCTGAATATT GTTACTGGTG CTGCAGATGA GATTTTGGCT CTTCTCAAGA GTGAAAAACC TGAGAAAAAG ATGGAGATCC ACAAGTTGTT GAACTATATT GAAAATCGTG AGTTTGATCA GCTTGTTTCC TTTGGGAAGT TGATCACCGA CTTTCAAGAG GCTGGTGATT CTTCTGGTGG TGGTGAGGAT GATGAGGATG ATTTGGGGGT CGCTGTTGAA TTTGAGGACA ATGAAGAGGA GAGTGATCAA GAAGACATTG TTCAAGAGGA GGATTGTGAG GAGGATCAAG AGCTTACCAG AACTGGAGGT ATGCAGGTTG GTGCTGGGAT TTATGACGAG GATGCAAATG AGGGCTCAAA TCTCAATGTT CAAGACATTG ATGCATACTG GCTCCAGAGA AGGATATCTC AAGCATATCA ACATAAGATT GATCCACAAC AATGCCAGGT ACTCTCTGAT GACCTGCTTA GGGATGTTGA GAACAAGCTG CTTCTGCACC TTGAAAAATT TAGCACAACA ATGCACTTTG AAAAATTTAG CCTCGTTCAT TTTCTGCTGC GGAACCGTCT TAAAGTTGTG TGGTGCACTC GTTTGGCTAG GGCACAAGAT CAGGAAGAGA GGTACCGAAT CGAGGAGGAG ATGAGGGCTT TTGGCCCAGA ATTGACAGCA ATTGTGGAGC AGTTGCATGC AACTAGAGCT ACAGCAAAGG AGAGGGAGGA GAACCTTCAA AAAAGTATTC ATGAAGAAGC CCGTCGTCTG AAGGACGAAG CTGGTGGAGA TGTTGCTGAC AGAGATTTAG AGAGTGGCTG GGTGAAGGGC CAGCGTCAGT TGCTTGACCT GGAGAGCTTG GCTTTTGACC AAGGTGCTCA CTTGATGGCG AACAAGAAGT GTGACCTTCC CCCTGGGTCT TACAGAATTC ATGGCAAGGG ATATGATGAA GTTCATGTCC CATGGGTTTC TAAAAAGGTG GATAGAAATG AGAAGCTTGT AAAGATTACC GAAATGCCTG ATTGGGCCCA ACCGGCTTTC AAGGGAATGC AACACTTGAA CAGGGTTCAG AGCAAAGTGT ACGAGACTGC ACTTTTTAAG GCAGAGAACA TTCTTCTTTG TGCTCCCACT GGTGCTGGGA AAACCAATGT TGCTATGCTG ACCATACTGC AGCAACTTGA ATTGAATAGG AACGAAGATG GAACTTACAA CCATGGAGAT TACAAAATTG TCTATGTTGC ACCCATGAAA GCCCTTGTTG CTGAAGTTGT AGGTAATTTG TCTAATTGTC TGAAGGATTA TGGAGTTACT GTGAGAGAAC TCAGTGGCGA TCAGTCCCTA ACTGGGAGAG AAATTGAAGA GGCTCAGGTA ATTGTTACAA CACCAGAGAA ATGGGATATC ATCACTAGGA AGTCTGGAGA TCGAACTTAT ACTCAGTTTG TGAGACTTCT TATAATCGAT GAAATTCACC TCCTTCATGA TAACCGAGGG CCTGTGCTTG AAAGCATTGT CGCTAGGACT CTTAGGCAAA TTGAAACCAC GAAAGATAAT ATTCGTCTGG TGGGTTTATC TGCTACTCTG CCAAATTATG AAGACGTGGC CTTATTTTTG CGGGTTGATC TTAAGAAAGG ATTGTTTAAA TTTGACAGCA GCTACAGACC CGTGTCTCTC CATCAGCAGT ATATTGGAAT CAGTGTGAAG GAACCGTTGC AGAGGTTCCA ATTGATGAAT GATCTATGTT ATCAGAATGT ACTGGCTTGT GCTGGAAAGC ACCAGGTCCT TATTTTTGTT CATTCGAGAG AGGAAACAGC AAAAACTGCA ATAGCATTAT GCGACACTGC AATGGCGAAC GATACCCTCA GCAGATTCTT GAAGGAAGAT AGTGAAAGTC GTGAAGTTCT TTTGAATCAC TTCGACTTTG TTAAGTATTA TGACCTGAAA GGAATTCTGC CTTACGGGTT TGCAATTCAT CATGCTGGGT TAACAAGAAG TGATCGTGAG ATTGTTGAGG GTCTTTTTGC TAAAGGGCAT GTGCAAGTCT TGGTTTCCAC AACAACTTTC GCTTGGGGTG TGAATCTGCC TGCACATACC GCTATTATAA AAGGAACCAA GGTGTATAAT CCTGAAAAAG GGGCGTGGAT GGAGTTGAAT CCTCTAGATG TTATGCAGAT GCTTGGTCGT GCTGGAAGAC CTAAGTATGA TCAACATGGG GAGGGTATAA TTATCACTGG CTATACCGAG CGGCAATATT ATCTTTCTTT GATGAATGAG CAACTACCTA TTGAAAGCCA GTTTATTTCT AGACTTGCTG ATCAGCTTAA TGCTGAAATT ACTGCAACCA GACTTCTTCA CGCGATGGTC GATGTGATAT CGAGCAATGG CTGGCTAAAT CTTGCTCTGT TAGCTATGGA AGTAAGTCAG ATGGTGACTC AAGGCATGTG GGAGCGAGAC TCTATGCTTT TGCAGCTCCC TCACTTCACA AAGGTCTTGG CCAAGAGGTG CCAGGAGAAT CCGGGGAAAA ACATTGAAAC CGTAGTCGAT CTTGTGGAGA TGGAAGACAA AGAACGCCAA GAGCTTCTGA AGATGTCAGA CGCTCAGCGT CTAGATATTG CCAGATTCTG CAACCGCTTC CCAAACATCG ACCTTACTTA TGAGGTTGTG GGCAGTGAAG AGGTGACCCC AGGGAAAGAG GTTACATTGC AAGTGATGCT TGAGAGAGAC ATGGAGGGGA AGACAGAAGT GGGACCCGTG GATTCACTCA GGTATCCCAA GACCAAAGAA GAAGGATGGT GGCTGGTTGT GGGCGACACC AAGACGAACC AGTTGCTGGC AATCAAGCGT GTCTCATTGC AACGGAACGT GAAGGTGAAG CTGGCTTTCA CAGTACCAAG TGAACTAGGA GAGAAGTCAT ACACACTATA CTTTATGTGC GACTCTTACT TGGGCTGTGA CCAAGAGTAC TCTTTCTCGG TTGATGTCAA AGGATCTGGC GTTGGAGATC ACATGGAAAA ATGA |
| Length | 3594 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 4761137.. 4765322 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G20960.1 |
| Description | U5 small nuclear ribonucleoprotein helicase, putative |
| TAIR curator summary | |
| Alias | [emb1507][embryo defective 1507] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 9.59166 |
Ahg476611 | calcium-dependent protein kinase 30 |
| 17.8885 |
Ahg483326 | GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain |
| 17.9444 |
Ahg937129 | metalloendopeptidases;zinc ion binding;DNA binding |
| 22.4499 |
Ahg945006 | pathogenesis related homeodomain protein A |
| 22.4499 |
Ahg496442 | Galactosyltransferase family protein |
| 23.3666 |
Ahg350042 | glucuronidase 2 |
| 23.9165 |
Ahg475499 | ARM repeat superfamily protein |
| 25.1992 |
Ahg936095 | alpha/beta-Hydrolases superfamily protein |
| 30.5941 |
Ahg906841 | DENN (AEX-3) domain-containing protein |
| 34.3511 |
Ahg897990 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|