Detail


ID : Ahg348635

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|348635|fgenesh1_pg.C_scaffold_5002027
Sequence
ATGTTCAATA AGTTTGGTTC GACGTCGGAG ACTCTAAGCA AAGCTTCAGC TGTGGTGCAC CGGATCGGCA CTGACGCTCA TCTTTATGAT GATCCGGAAG ACGTCAACAT TGCTCCACTT CTCGATAGCA AGTTCGAATC TGAGAAATGT GAAGCTCTTA AGCGTCTCCT TGCTCTTATC GCTCAGGGCT CTGATGTCTC CAATTTCTTC CCTCAGGTGG TGAAAAATGT GGCGTCACAG TCATCGGAAG TGAAGAAGCT TGTTTACTTG TATTTGCTAC AATATGCAGA AAAGCGTCCA AATGAAGCGT TGCTATCGAT CAACTATTTT CAGAAGGACT TGGGGGATCC AAATCCATTG GTTAGGGCTT GGGCACTTCG TACAATGGCG GGGATTCGCT TACATGTTAT TGCACCTATT GCACTCGCAG CTGTGGGTAA ATGTGCTAGG GATCCAGCGG TTTATGTCCG GAAATATGCT GCAAATGCTC TTCCGAAGTT GCATGATTTG CGGCTGGAAG AACATGCTTC TGCGATTGAA GAGCTAGTTG GGATACTGTT GAATGACCAT TCTCCAGGAG TAGTTGGAGC TGCGGCAGCG GCATTCACCT CCATCTGTCC AAATAACTTC AAACTGATTG GAAAGAACTA TAAGAAGTTG TGCCAGATTC TTCCTGACGT AGAAGAGTGG GGTCAGATAT TACTCATAGG AACTCTTTTG CGCTATGTGG TTGCTAGGCA TGGACTTGTA CGGGAATCTT TGATGTTGTC CCTACATGGT ATGGATAGTA ATGGCTTCTG TGAGAAGGAT GGCCTAGTCA GAGATCTTAC ATTGGATAAA GAAGAAGATG GTGATAAAAG TGATTCATTT GATGTTAATC TGGTCAGCCT TGTATCTAAA TGTTACATTG AAGGTCCAGA TGAGTATCTA TCAAGATCTA GTTACACCGA TACAGTGTCA TCTGCTTTCG ATAGCAAAGA GACCACATCT ATTGCACATA ATGAAGATGT TAAGATCCTG CTTCAGTGTA CATCCCCATT GCTATGGAGT AATAACAGTG CGGTTGTACT AGCAGCAGCT GGCGTTCAAT GGATAATGGC GCCTCTGGAA GATGTTAAGA AAATTGTTAA ACCGCTCTTG TTTTTGCTTA GGTCATCCAG CGCCTCCAAA TATGTGGTCC TCTGCAACAT CCTAGTTTTT GCCAAAGCAG TCCCTTCTCT CTTTGCTCCA CACTTCGAAA CTTTCTTTAT TTGTTCCTCA GATGCATATC AAGTTAAAGC ATACAAGCTG GAAATGCTTT CTCTCATTGC TACCACTTCA TCTATCTCTT CAATTTTGAG AGAGTTTGAG GATTATGTTA AAGATCCAGA CAGGAGATTT GCGGCTGATA CAGTTGCAGC AATTGGTTTG TGTGCAAAAA GACTGCCAAC AATTCCAACT ACATGTCTTG ATGGATTATT AGCACTAGTT CGACAGGAAT CTTTTGCTGG CGATTTTGAG TCAGTGGATG GAGAAGCTGG AGTGTTGGTG CAAACCGTAA TGTCGATTCA GACTATCATA GAGCGAGATC CCCTTCGTCA TGAGAAAGTT TTAATTCAGC TGTTTCGTAG TCTGGATTCA ATCAAGGTAG CTGCTGCTCG TGCAACTATT ATTTGGATGG TGGGGGTCTA CTGCTCTTTG GGTCATATCA TTCCTAGGAT GCTTACCACA ATAACCAAGT ACCTTGCATG GAGCTTTAAA TCAGAGGCAT CAGAGGCAAA ACTTCAGATT CTTAATGCTA CTGCTAAGGT TCTAAAAAGT GCAGAGGCTG ACGACTTTCA GATGTTGAAA AGGGTTGTGA TTTATGTGTT TGAATTGGGC GAATGTGACT TAAGCTATGA TGTTCGTGAT CGAACCCGTT TCCTCAAGAA ACTGCTGTCA TCCAAATTAG CTTGTCATGA GCCGGCAGAA GACAGTGTTG CATCACAAGA AAATATCGCT ACGCATGTTG TGGAACATGT CTTTGGAAGA AAACTGAAAC CTTTTTCACC TTTAGCCCTG CACAATCGTT TTTATCTTCC TGGATCTCTA TCACAGATAG TTCTTCATGC AGCCCCTGGA TACGAACCTC TTCCAAAGCC CTGCAGTTTT GTGTTTGAAG AACAAGACCA GCTGTCAGAT TTAGACAGAC AAAGAGAGGC CGCAGCTGAT TTAGATGGTT CTCAGGAATC ATCTGAAACA GTGGATGACG ATGGCTCCTC TGATTATGAC TCTGAATCTT CTATTGGTTC AGATTGCAGC AGTGACGGTG ATGAAAGAAC GGTGTCTAAT GGTGCCAATG ATCCAGCTGC TCCTTTAATT CAAATTTCAG AGACTTCTGT TTCCGCTGAC CAAGAAGAAC TAAGGTCCAA AAAGGCCCTG GATTTGTGGT TAGATGATCA GCCAAGTACA TCAAACCAAA CTCCATCTGC ATTAAATAGT AATCAGAGCT CTTATGCGAA GATATCCATT GGTGATATAG GAAGCCGAGT GAAGCCTAAA AGCTATAGTC TCTTAGACCC TAGAAATGGC AGTGGCTTGA AGGTAGACTA TGCCTTTTTA TCTGAAGTCT CTACTGTATC TCCATTACAT GTTTGCGTAG AAGTTCTGTT TGAGAACAGT TCTGCTGAAC CTATCCTGGA GGTGAATTTG GAAGATGAAG AATCGATGAA GGTAGCAGAC TCTTCTGAAC AGACTTTGGT TGGTAAAGCA AATGCATCTT ACAACAATGT GCCAACTCTA ATTCCAATGG AGGAAATCAG CTGCCTTGAA CCACATCAGA GCGCAAAGAG GCTTATCCAG GTTCGGTTTC ATCACCACCT GCTTCCCATG AGGTTAACCT TACATTACAA TGGAAAGGAG GTTCCTGTCA AGTTACGACC TGATCTTGGA TACCTTGTGA AACCATTTTC AATGAGCATC GAGGAATTCT TAGCCACAGA ATCTCGATTA CCTGGAATGT TTGAGTATAG TCGAAGGTGT ACTTTTGACG ATCATGTTAA AGATTCAAGA ATGGAGAATG GGAAAGACAA ATTTCTCAGC ATCTGCGAGT GTATAACACT AAAGGTGCTT AGCAACTCAA ATCTACACCT TGTGTCTGTG GATTTACCAG TTGCAAACTC ACTCGAAGAT GCAACTGGTC TGCGATTAAG ATTCAGCAGC AAAATCTTGA GCAGTGAGAT CCCTCTTTTG ATTACCATCA CAGTCGAAGG CAAATGCACC GAAGTTCTGA ATATAACAGT CAAGATCAAT TGCGAAGAAA CGGTTTTTGG TTTAAACCTG TTGAACAGGA TAGCTAATTT CATGGTTGAG CCGTCTTCGT CAGCCAGTTG A
Length3351
Protein Sequence
Protein Residue
Map Locationscaffold_5: 16526370.. 16531363
Download Sequence
A.thaliana
AGI-codeAT3G55480.2
Descriptionprotein affected trafficking 2
TAIR curator summary
Alias[AP-3 beta][PAT2][WAT1][beta-subunit of adaptor protein complex 3][protein affected trafficking 2][WEAK ACID TOLERANT 1]
Gene coexpression
MR
MR Locus Description
5.2915 Ahg944981
6.63325 Ahg920270 calmodulin binding;purine nucleotide binding
7.93725 Ahg921297 MA3 domain-containing protein
8.544 Ahg490219 pre-mRNA splicing factor-related
16.2481 Ahg473664
16.7033 Ahg898458 Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
22 Ahg495431 P-loop containing nucleoside triphosphate hydrolases superfamily protein
25.5147 Ahg495211 PLAC8 family protein
26.0576 Ahg939856 Protein of unknown function (DUF668)
26.9815 Ahg472456 Endoplasmic reticulum vesicle transporter protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression