| Annotation |
|---|
| Description | jgi|Araly1|490219|fgenesh2_kg.6__3353__AT4G03430.1 |
| Sequence |
GTTTTGTTTC TTTGACCGGA GAATCTCGAT TAGGTTACGA TGGTGTTTCT CTCGATCCCC AACGGGAAGA CTCTGTCGAT CGACGTGAAC CCTAAATCAA CCACCGTCTC CGCCTTCGAA CAATTGGTCC ACCAACGCAG TGATGTTCCA AAGCCCTTCC TTCGTTACTC GCTCCGTATG CGTAACCCTA GCCATGTATT CGTCGATTCC GATTCGATCC TATTATCCGA TCTCGGTGTT TCTCGTTTCT CTACTGTGAT TATCCATGTC CCGCTTTTGG GTGGTATGCA AGGAATGGCT CCGCCGAAGC CTCGTCTCGA CTTCCTCAAT TCTAAGCCTC CGTCAAATTA TGTAGCGGGT CTGGGTCGTG GTGCTACTGG GTTTACTACT CGGTCAGATA TTGGTCCTGC TCGTGCTGCT CCGGATCTGC CTGATCGATC TGCTGCGGCT ACAGCGGCTG CTCCAGGAGT AGGTCGTGGA GCAGGGAAGC CAAGTGAAGC GGAGGACGAT GAAGAAGCTG AGGAGAAAAG GTACGATGAG AATCAGACGT TTGATGAGTT TGAAGGGAAT GATGTTGGTT TGTTCGCTAA TGCTGAGTAC GATGAGGATG ACAAAGAGGC TGATGCCATC TGGGAGTCTA TTGATCAGAG GATGGATTCG AGGAGGAAAG ATCGGAGAGA AGCGAAGCTG AAGGAAGAAA TCGAGAAATA CCGAGCCTCG AACCCTAAGA TTACTGAGCA GTTTGCAGAT TTGAAGAGGA AGTTACACAC TTTGTCTGCG GATGAATGGG ACAGTATTCC TGAGATTGGG GATTACTCGC TGCGGAACAA GAAGAAGAAG TTTGAGAGCT TTGTACCTAT TCCTGATACG CTTTTGGAGA AGGCGAAGAA AGAAAAGGAG CTTGTCATGG CCTTAGACCC AAAGAGCAGA GCCGCTGGTG GCTCGGAGAC ACCATGGGGG CAGACGCCAG TGACAGACTT GACTGCCGTA GGTGAGGGAA GAGGTACGGT GCTGTCTCTG AAGCTTGATA GGTTATCAGA TTCAGTTTCT GGGCAAACTG TTGTGGACCC TAAAGGCTAC TTAACTGACC TAAAGAGTAT GAAAAGAACC ACTGATGAAG AGATATACGA TCGCAACAGA GCTAGATTGT TATACAAGAG TCTGACTCAG TCGAATCCAA AGAATCCAAA TGGCTGGATT GCTGCTGCTA GAGTGGAGGA AATGGATGGG AAGATTAAAG CTGCTAGGCT TCAGATTCAG AGGGGCTGCG AAGAGTGCCC GAAAAATGAG GATGTTTGGC TTGAAGCTTG TAGGTTAGCC AATCCAGAAG ATGCCAAGGG GCTATGGTTG GAGGCTGCAA AGCTGGAGCA TGATGAGGAG AACAAGAGTA GGGTGTTGAG AAAGGGACTG GAACATATTC CAGACTCTGT AAGGCTATGG AAGGCTGTTG TTGAGTTGGC TAATGAGGAT GATGCAAGGA TTTTGCTTCA CAGGGCTGTG GAGTGCTGCC CTTTGCATCT GGAGCTATGG GTGGCACTTG CGAGGCTCGA AACATACGCT GAATCAAAGA AGGTGTTGAA TAAAGCGAGG GAGAAGCTCC CGAAGGAGCC TGCGATTTGG ATCACCGCTG CTAAGTTAGA GGAAGCTAAT GGGAACACGG CTATGGTGGG AAAGATTATT GATAGGGGTA TAAAGACTCT GCAGAGAGAA GGGGTTGTTA TTGACCGAGA AAATTGGATG AATGAGGCTG AGGCCTCTGA GAGAGCTGGG TCTGTCGCAA CATGCCAGGC GATTATTAAG AACACAATCG GTATTGGAGT CGAAGAAGAG GATAGAAAGA GAACTTGGGT TGCTGATGCA GATGAGTGCA AGAAGAGGGG TTCCATTGAG ACTGCAAGAG CAATATACGC CCATGCTCTT ACTGTATTCT TGACCAAGAA AAGTATCTGG CTTAAAGCTG CGCAGCTTGA AAAGAGCCAC GGGAGTAGGG AGTCCCTTGA TGCCTTGTTG CGTAAGGCGG TGACATATGT CCCGCAAGCT GAGGTTCTCT GGCTCATGGG TGCCAAAGAG AAGTGGCTCG CTGGAGATGT TCCAGCAGCC CGTGCTATTT TACAAGAGGC TTATGCTGCA ATTCCCAACT CTGAGGAAAT CTGGCTTGCT GCTTTCAAGC TCGAGTTTGA AAATAAGGAG CCAGAGAGGG CGAGAATGCT GCTTGCAAAA GCAAGGGAAA GAGGAGGGAC CGAGAGGGTC TGGATGAAAT CCGCCATTGT TGAGAGAGAA CTTGGCAACG TAGAGGAGGA GAGGAGATTG CTTAATGAAG GCTTGAAGCA GTTTCCAACA TTCTTCAAGC TTTGGTTGAT GCTTGGGCAG CTCGAGGAAC GGTTCAAGCA TTTGGAACAG GCCAGGAAAG CTTATGACAC TGGTTTGAAG CACTGTCCCC ACTGCATACC GCTGTGGCTC TCGCTCGCTG ATCTTGAAGA GAAAGTGAAT GGGCTGAACA AAGCTCGGGC TATTCTCACC ACGGCCAGGA AGAAGAATCC TGGGGGGGCT GAGCTATGGT TAGCTGCTAT TCGTGCCGAA CTGAGGCATG ACAACAAGAG AGAAGCAGAG CACTTGATGT CAAAGGCTCT GCAAGAGTGT CCCAGTAGTG GTATCCTCTG GGCTGCGGAC ATCGAGATGG CGCCACGTCC TCGACGGAAA ACAAAGAGTA TGGATGCTAT GAAGAAGTGT GATCGCGACC CTCATGTCAC CGTAGCTGTT GCCAAGCTCT TTTGGCAAGA CAAGAAGGTG GAGAAAGCCA GATCATGGTT TGAACGTGCT GTTACCCTTG GCCCAGATAT TGGCGATTTC TGGGCGTTGT ACTACAAATT TGAACTTCAA CATGGCTCTG ATGAGAACAG GAAGGAAGTT GTGGCGAAGT GTGTAGCTAG TGAGCCGAAG CATGGTGAGA AGTGGCAAGC CATCTCCAAA GCGGTTGAGA ATGCTCACCA GCCTATTGAA GTCATCTTGA AGAGAGTTGT GAGTGCGTTG AGCAAGGAAG AGAATGCTGC TTGAGAGTAA CAAATTCCTT ATGTTTTTCA TGATCAAGCT CTGCTCATAG CACATTACAC TTTTAGTTCT TGTTTTCTCT TTGCAGGCTC AACTTTTAAC CGTTCATGTT TTTCTTCAGT AGCGAGAGCT GATATTGATT TGCTGGAGTG TGTTTTCGAC CTGATACATG TAGAATTCTC AGTTTACTGA ATGCTTCAGT TTTCTTTGTG AGTCTCTGTG TGCTGCAGTG TTCAGCTATT TAACTTCTTT TGTTATTGTA TAACTGATCA TTTGTTGTT |
| Length | 3329 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 21730783.. 21734153 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G03430.1 |
| Description | pre-mRNA splicing factor-related |
| TAIR curator summary | Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes. |
| Alias | [EMB2770][STA1][EMBRYO DEFECTIVE 2770][STABILIZED 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.82843 |
Ahg492913 | VPS54 |
| 3.60555 |
Ahg495894 | cyclic nucleotide gated channel 5 |
| 5.2915 |
Ahg949816 | dentin sialophosphoprotein-related |
| 7.34847 |
Ahg328336 | RING/U-box superfamily protein |
| 7.34847 |
Ahg933239 | Ring/U-Box superfamily protein |
| 8.544 |
Ahg348635 | protein affected trafficking 2 |
| 9.32738 |
Ahg471958 | |
| 10.0995 |
Ahg490566 | cationic amino acid transporter 9 |
| 10.0995 |
Ahg481564 | DNAJ heat shock N-terminal domain-containing protein |
| 10.583 |
Ahg354576 | |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|