| Annotation |
|---|
| Description | jgi|Araly1|349878|fgenesh1_pg.C_scaffold_6000471 |
| Sequence |
ATGGAGAGCA CGACGGAGCA GCCGAGGAAC ATCTCGGGAT CGATGCAGAG CCCTAGATCT CCGTCTCCGC AGCCGTATTT GTCAGTCTCC GTCACAGATC CCGTCAAATT AGGCAATGGC GTACAAGCTT ATATCTCTTA CAGAGTTATC ACCAAGACCA ACTTGCCGGA GTATCAAGGA CCTGAGAAGA TTGTTATCAG ACGATACAGT GATTTCGTCT GGTTACGGGA TCGGCTTTTT GAGAAATACA AGGGCATTTT CATTCCTCCT CTTCCAGAGA AGAGTGCTGT AGAAAAATTC CGCTTTAGTG CCGAATTTAT TGAAATGAGG CGAGCAGCAT TGGATATATT TGTTAATCGA ATAGCATTAC ACCCTGAGCT TCAGCAGAGT GAGGATCTTA GGACCTTTTT GCAAGCAGAT GAAGAGACAA TGGACAGATT CAGGTTTCAG GAAACTGGTA TATTCAAGAA GCCTGCAGAT CTTATGCAAA TGTTTAGGGA TGTCCAGTCA AAAGTTAGTG ATGCTGTCCT TGGAAAGGAA AAACCTGTTG AAGAAACTAC TGCTGACTAC GAAAAGCTTA AGCATTACAT TTTCGAGCTT GAGAACCACT TGGCTGAGGC TCAGAAGCAT GCATATCGCC TTGTCAAGAG GCATAGAGAG TTGGGTCAAT CACTGTTGGA TTTTGGCAAA GCTATAAAAC TTCTTGGGGC TTGTGAGGGT GAACCTACAG GAAAAGCATT TTCCGATCTT GGAACTAAAT CTGAACTGTT ATCAATTAAG CTCCAAAAAG AGGCTCAACA AGTCCTGATG AACTTCGAGG AACCTTTGAA GGACTATGTT CGTTATGTGC AATCAATTAA AGCAACAATT GCAGAGCGAG GCACTGCTTT CAAGCAACAT TGTGAATTGG CAGAAACAAC GAAGTTAAAA GAAATAAATC TTGACAAACT CATGCTCACA CGTTCAGACA AAGTAGGAGA AGCTGAGATC GAATACAGAG AGATAAAAGC AGAAAGTGAA GAAGCTACGA GAAGATTTGA GAGGATAGTG AAGAGAATGG AGGAGGAGAT AGTAAGGTTT CAAGAGCAGA AGACAGAAGA GATGGGAGTC GCATTCCATC AGTTTGCGAA AGGACAAGCT CGCTTAGCAA ACAGTGTCGC AGATGCTTGG AGATCCCTTC TTCCCAAACT TGAAGCTTCT GCTACTGTCT AA |
| Length | 1212 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 2183909.. 2186770 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G06140.1 |
| Description | sorting nexin 1 |
| TAIR curator summary | Homolog of yeast retromer subunit VPS5. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. In roots it co-localizes with the PIN2 auxin efflux carrier. Involved in endocytic sorting of membrane proteins including PIN2, BOR1 and BRI1. |
| Alias | [ATSNX1][SNX1][ARABIDOPSIS THALIANA SORTING NEXIN 1][sorting nexin 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 11.6619 |
Ahg471821 | syntaxin of plants 51 |
| 20.6398 |
Ahg492373 | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein |
| 24.3721 |
Ahg911328 | Phox-associated domain;Phox-like;Sorting nexin, C-terminal |
| 27.6586 |
Ahg474984 | Protein of unknown function (DUF3741) |
| 29.5973 |
Ahg491431 | ENTH/VHS/GAT family protein |
| 29.7321 |
Ahg479149 | TOPLESS-related 2 |
| 30.1993 |
Ahg495042 | exocyst complex component 84B |
| 32.8634 |
Ahg474234 | A20/AN1-like zinc finger family protein |
| 42.7434 |
Ahg478823 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 42.8135 |
Ahg912607 | nucleic acid binding |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|