Detail



ID : Ahg353421

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|353421|fgenesh1_pg.C_scaffold_7000594
Sequence
ATGGAGATTT CCTCGGCCGA ATCGTTGTCC ATCTCTGGCG CAACCGCCTC TGAGGTCGTC TCGGAGCCTT CGGTATCTTC TTCGTCATCC TCCTCGCGCC TGTCTGCTTC GTCGCCGAAT CAGGCCTCTT CCACCGCTTT CTCCACCATG GATCACGCAT TTGCTACGGT GGCAGTTGAA GATGAGGAGG ACGTGTGCAG GATTTGCAGA ATTCCTGGGG ATACGGACAA TCCGCTTCGG TATCCGTGCA CCTGCCGCGG GAGCATCAAA TTTGTTCACC AGGATTGCCT CCTTCAGTGG CTTAATCACT GCAAAGCTCG TCACTGCGAG CTTTGCAAAC ATCCTTTTTC ATTCTCCCCA GTGTATGCTG AAAATGCTCC AACAAGGCTC CCTTTCCAGG AGTTTGTAGT TGCCATTGCC ACGAAACTTT TCGGTGTTTT ACACTTCTTT CTGCGGTTGA GCTTCCTGAT TTCGGCCTGG TTTATCACTA TTCCTTATAT CACATTTTGG GTATGGCGAT TGGCTTTTGT ACGGAGTTTT GGTGAAGCTC AGCGGTTGTT CTTAAGTCAC ATCTCCACCA CAGTAATTCT CACTGATTGT TTGCATGGGT TCTTACTGTC GGCAACAATT TACTTCTTTT ACTTTGGAGT AATTTTACTA AAGATGATCT TTAGGCGTTT GCGAGAGCTA AGGGGGCAAG AAGAGAGAGA CGATGAAGTG GACAGAAATG GTGCTCGTGC TGTCAGAAGA CCTGCTGGAC AGGCTAATAG GAATCTTGCG GGAGAGGAGA ATTGCGAAGA TGCTGGGGAT CAGGGTGCTG CGGTTGGTCA GATTGTTAAT AGGAACCCTG AAAATGTTCT GGAAAGGTTG GGCATACAAG CAGTTCGTAT CGAGGCTCAG GTTGAACAGA GTTTTCATGG TTTGGACGAC GCTGATGGTG AAGAAGAAGC TGGATCATCC CTCCTTAAAC AGTTCTCGGC AGCAATGAGG CATCTGATGA CTATGCTCAA AGCTACCTGT TTTTATGTCT ACTTCTTAGG GGTCTTCCCT CTGATGTGTG GGTGGTCGCT AGATATTTGC ACGGTTGGGA TGTTTGGTAA AACAATGTCC CACAGAGTAC AGTTTTTATC AACTTCTCCA TTGGTAAGCT CACTTCTTCA TTGGGTTGTT GGATTCATGT ACCTCATGTT TACAATGATC TTCGAAAGCC TTCTTCGAGA GGTTCTTCGA CCTGGAGTTT TGTATTTCCT TGATTATCTT GAAGATCCTA ATGTCGATCC GTTCCAAGAT ATGATTGATG ATCCAGTACA CAAGCAAGCT CGGAAGGTTC TGTTAGAAAC TGCAGTGTAT GGAAGTTTGA TTGTCATGCT GGTATTTTTG CCAGTCAAAC TTGCGATCCG GATGGCTCCT TCAATCTTTC CACTCGACAT ATCTGTATCC GACCCATTCA CTGAGATTCC AGCCGACATG CTTCTGTTAC AAATATGCAT ACCATTTGGT ATCAAGCATT TCAGATTCCA GACCTCAATT AAGTCCCTTC TACGTTACTG GTTCACTGGT GTTGGTTGGG CGCTTGGTTT GACAGACTTC CTCTTGCCAA GACCAGAGGA CAACATTGGT CAGGACAATG GAAACGGTGA ACCAGGAAGG CAGAACAGAG TACAAGTATT GCAGGTCGGT AGACCAGATA GGCCCATGGC TGTTCTTCCA GCAGCTGGTG ACCCTAACAG AAGTCGCCTA TGTGCTGGGA GTGTCAACAC GGGTGAGGAA TATGAAGATG ATGAAGAACA ATCTGATTCA GAGTACAACT TTGTCGTCAG GATAATCCTC CTACTTGTTG CATGGGTGAC TCTTCTTCTC TTCAATTCGG CATTGATAGT TGTACCAGTT TCGGTTGGAC GTACTCTATT CAGTGTCATC CCAATTCTCC CAACAACTCA TGGCATCAAA TGCAATGACC TGTATGCTTT TGTCATTGGC ACATATGCCT TGTGGACTAC CATATCTGGG GCCACGTACG CTATTGAGCA TGTCAAGTCG AAGAGGACTT CAGTCTTGCT TAACCAAACA TGGAAATGGT GTGAGATTGT TTCCAAGAGC CCGGTGCTGT TAGCCATATG GGTTTTTATC ATTCCGGTGC TAATTGGACT TCTGTTTGAG CTTTTGGTTA TTGTCCCAAT GAGAGTCCCA GTTGATGAAA GCCCTGTCTT CCTCCTGTAC CAAGACTGGG CTCTTGGGCT CATCTTTTTG AAGATCTGGA CTAGACTGGT AATGCTGGAC CATATGCTTC CTATAGTGGA TGATAGCTGG AGAGCAAAGT TTGAGAGGGT AAGAGAAGAT GGCTTCACAA GGCTTCAAGG GTTATGGGTA CTTAGAGAGA TTGTGTTCCC GATTGTGATG AAACTCCTAA CAGCTTTATG CGTGCCTTAT GTCCTGGCGA GAGGCGTGTT TCCAATGCTC GGATATCCGC TAGTAGTGAA CTCGGCGGTC TACAGATTCA CATGGATAGG CTGTCTCTCG GTGATCCTCT TCTGCGTCTG GTTCAGAAAC CTTCACAACT CCATCCGTGA TGACCGTTAT CTCATTGGTC GGAGACTCCA TAACTTTGGG GAATCTGCTT TGGCTAATCA AAACCAGAAG TGA 
Length2643
Protein Sequence
Protein Residue
Map Locationscaffold_7: 2773257.. 2781740
Download Sequence
A.thaliana
AGI-codeAT4G34100.1
DescriptionRING/U-box superfamily protein
TAIR curator summary
Alias[CER9][SUD1][ECERIFERUM 9][SUPPRESSOR OF DRY2 DEFECTS 1]
Gene coexpression
MR
MR Locus Description
20.2485 Ahg476509 cyclin-dependent kinase D1;1
23.0651 Ahg937643 DNA binding;ATP binding
29.9165 Ahg887308
37.1483 Ahg921126
37.3363 Ahg934181 RHO guanyl-nucleotide exchange factor 14
43.4511 Ahg935611 cyclic nucleotide gated channel 3
48.3115 Ahg490404 WRKY family transcription factor
52.3068 Ahg475816 F-box/RNI-like superfamily protein
55.0999 Ahg900074 Protein of Unknown Function (DUF239)
65.0769 Ahg943920
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression