Detail



ID : Ahg356713

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|356713|fgenesh1_pg.C_scaffold_8000500
Sequence
ATGAACGTGG TGCAACCAAA CTCCTACGCA CTAGTGGTGA GCACAGAGAA CATAACCCTA AACTGGTACT TAGGCAACGA CCGATCAATG CTTCTCTCTA ACTGCATCTT CCGTATGGGC GGAGCCGCGG TACTTCTCTC GAACCGCTCC TCGGATCGTA GCCGTTCAAA ATATCAGCTC ATCCACACCG TTCGTACCCA CAAAGGAGCT GATGACAACG CATTCGGCTG TGTTTACCAA CGAGAAGACA ACAACGCAGA AGAAACCGGC AAAATCGGAG TATCACTCTC TAAAAACCTA ATGGCAATAG CTGGAGAAGC TCTCAAGACA AACATCACAA CTCTCGGACC ACTAGTCCTA CCAATGTCCG AACAACTTCT CTTTTTCGCG ACCCTCGTGG CCCGAAAAGT CTTCAAAGTC AAGAAAATAA AGCCTTACAT TCCCGATTTC AAGCTAGCTT TCGAGCATTT CTGTATCCAC GCGGGAGGTA GAGCCGTGCT CGACGAGATA GAGAAGAACT TGGATTTATC CGAATGGCAT ATGGAGCCAT CGAGGATGAC GTTGAACCGG TTTGGAAACA CTTCGAGTAG CTCACTTTGG TATGAGCTTG CGTATAGTGA AGCTAAAGGA AGGATTAAGA GAGGAGATAG GACTTGGCAG ATTGCGTTCG GATCGGGTTT TAAGTGTAAC AGTGCGGTTT GGAAAGCTTT GAGAACGATT GATCCAATGG ACGAGAAGAC TAATCCATGG ATTGATGAGA TTGATGACTT TCCTGTTCAA GTTCCTAGGA TCACTCCCAT TACGTCGTCG TAG 
Length813
Protein Sequence
Protein Residue
Map Locationscaffold_8: 3715976.. 3717088
Download Sequence
A.thaliana
AGI-codeAT5G43760.1
Description3-ketoacyl-CoA synthase 20
TAIR curator summaryEncodes KCS20, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Alias[KCS20][3-ketoacyl-CoA synthase 20]
Gene coexpression
MR
MR Locus Description
6.48074 Ahg483786 arabinogalactan protein 16
9.16515 Ahg333105 3-ketoacyl-CoA synthase 20
10.7703 Ahg492137 PLC-like phosphodiesterase family protein
15.7162 Ahg943550 glycerol-3-phosphate acyltransferase 3
20.2978 Ahg948737 HAD superfamily, subfamily IIIB acid phosphatase
20.8806 Ahg478515 FASCICLIN-like arabinogalactan protein 18 precursor
24.2487 Ahg900167 3-ketoacyl-CoA synthase 10
24.6779 Ahg493322 Uncharacterised protein family (UPF0497)
36.2629 Ahg480225 xyloglucan endotransglucosylase/hydrolase 4
38 Ahg931800 3-ketoacyl-CoA synthase 9
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression