| Annotation |
|---|
| Description | jgi|Araly1|473553|fgenesh2_kg.1__3507__AT1G33980.1 |
| Sequence |
GGGGAGAGAG GAAACAAAAA TTAGGGCAAA ATTGCGTCTT GATGTGTTTC ACTTTTCTTC TTCGTGTTTG ATTTGCGACT TTCTCTAAGG AAAATTTAGG GTTTTTGATG AAGGAACCTT TGCAGAAGAA GAAGGTGGTT GTTCGTCACT TGCCGCCTTC TCTTTCACAG TCCGATCTCT TATCTCAAAT TGATCCTCGT TTCGCTGATC GTTATAATTG GGTTTCGTTT CGTCCTGGGA AGTCCAGCTA TAAAAATCAG AAGTATTCAC GGGCCTACGT AAGTTTCAAG GCACCAGAAG ATGTTTATGA GTTCGCTGCA TTTTTCAACG GGCATGTGTT TGTTAATGAA AAGGGTGCTC AGTTTAAGGC TGTAGTTGAA TATGCGCCTT CTCAGCGTGT GCCGAAACCG TGTGATAAGA AAGATCCTCG TGAAGGGTCT ATTAGTAAAG ATCCTGATTA TCTGGAGTTC CTTAAGGTGA TTGCTCAACC TGTTGAGAAT CTTCCTAGTG CTGAAATCCA GTTGGAAAGA AGAGAAGCTG AGCAGTCTGG TGCTTCAAAA GCGGCTCCCA TTGTTACCCC TCTTATGGAA TTCATACGTC AAAAACGTGC TACTGTGATG GGATCCCAGG GTTTATCAGA TGTTCGAAGA GGAGGTAGAA GAGCCAGAGT AGTCTCTGCA AACAAGCCGA GTTCAAGGCC CTCAAAACGA AACTCTGAAA AGAAAAAGTA TGTGGAAAAA GACAGTTCAA AGAACGTGCC TCGGAAGAGT ACAGCAGACG TCAGCAGCTC TAAGCCAGAT TATCGTCAGT CAAATTCAAG TGGAAATGAA ACTGGTAATA AATCAACAGC CCCTGTCATC GATAGCTCTC TCCCAGGGAT CGCATTGACT ATGGATTCTG GGAAGAAAAA GATTTTGCTC CTGAAGTCAA AAGACCGAGA CAATCCTGAT AACCCTCCAC CACAACCGGA ACAGCATATT GAAACTATTC TTTCTGGAAA CTCCACGGCT TCAAGACAGA ATCAGAAGAG TGATGTTGGT GGGAGATTGA TCAAGGGAAT ACTTCTGAAA AGTGACTCAC GACCGAGCCA GTCTTCCACT TTTGTCCAGC CTGAGCAAAG AGTGGAACCC TCAGAAGCTG AAAACTACAA ACGACCTCCT CGGCCAGCCA ACACTCGAGC AGGGAAAGAT TATCATGCTT CTGGTACCAT CAGTGAGAAG CAAGAGAGAC GTACAAGAAA CAAGGACAGA CCTGATCGTG TTGTGTGGGC TCCTCTTCGT CGTGATGGCT CCAATATCAG TGAGGATCAA CCACTATCTT CAGCAGGAAA CAATGGAGAA GTGAAAGACA GGATGTTCTC TCAAAGATCT GGAGAAGTGG TGAACTCCTC TGGTGGACAC ACTCTTGAGA ATGGTTCTGC CAGACATTCT AGTCGTCGTG TTGGAGGTCG CAATAGAAAA GAAGAGTTGA TGACTGGTGA GGGTAAAACC TCCCGGAGAG GTGGTGGTGG TGGTCCCAAT TCACAAGAGA AGCAAATGTG GATTCAAAAA CCATCATTGG GTACTTGATA TATTACATAA CATTGTGGCT AAATATATGA GCCATTCCAA TGGATTTTGT CCTTGAACGG GAATCTATAG ATCTCAATCG AAATGGGGAG TAACACTATC AACATCACTC GGGTTTTGGA GACTTTTGGT CCAATGTCGT AAGTCGTAGT ATTGCACATA AAAGAGGCCG TTCTCAAAGT AGGAATCAGC TCAAGATTTA TGAGAGAGAG ACAAGAAAAG ACTCGTTTGC GGTTCACGGT ACCTGCATCC CCCCTTTTGG CTTGTGCGGT GTTACAGACA AGTGAGTGAG AAGTGAGAAC TTACTCCCAA GTCTGAGTAA TGAAAATAAA GTTAAAGTGT ATAGGGAGCG GGAAATACAG TGTGTCGGGT TTTATTTTGG GTTCCTGAGA GGCCTTAGAA CGTGATTGCA CGATTTTAAC CATATAATAG TTTGATTACT GTGAAGTTAA TTTCTGGCTA AGTAATATTT TCTTGTGGAA GTTGGTTTAT TT |
| Length | 2062 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 15022788.. 15026195 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G33980.2 |
| Description | Smg-4/UPF3 family protein |
| TAIR curator summary | Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD) |
| Alias | [ATUPF3][UPF3] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.32456 |
Ahg486495 | casein kinase II beta chain 3 |
| 11.3137 |
Ahg485637 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 13.0767 |
Ahg472928 | histidine kinase 3 |
| 15.0997 |
Ahg471074 | Cysteine proteinases superfamily protein |
| 16.5529 |
Ahg903021 | auxin transport protein (BIG) |
| 16.9411 |
Ahg478240 | Nuclear transport factor 2 (NTF2) family protein |
| 17.4642 |
Ahg345735 | Prenyltransferase family protein |
| 20.7846 |
Ahg490855 | calcium ATPase 2 |
| 22.5167 |
Ahg921760 | Protein of unknown function (DUF1664) |
| 22.7596 |
Ahg487312 | Surfeit locus protein 6 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|