Detail



ID : Ahg474678

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|474678|fgenesh2_kg.1__4632__AT1G56110.1
Sequence
TTAGGGTTTT AGTTTCTTCT CCTCCAAAAA TGGCGATGTA TGTTCTCCAC GAATCTTCTT CCGGCTATGC TCTCTTAGAG GTTCACGGAC TAGATGAGAT CGGACAGAAC ACTGAGGCGG TTCGGACCTC CGTCTCCGAC CTCAGTCGCT TTGGCCGTGT TGTTCAGCTC ACAGCGTTTC ATCCCTTTGA GTCTGCTCTC GATGCTCTCA ACCAAGTCAA CGCCGTCTCT GAAGGTGTTA TGACTGATGA GCTTAGAAGT TTTCTGGAGT TAAATCTTCC TAAAGTCAAG GAGGGAAAGA AGCCCAAGTT CAGCTTAGGA TTGGCTGAGC CTAAACTCGG TTCACATATA TTTGAAGCCA CTAAAATCCC ATGCCAGAGC AATGAGTTTG TTCTTGAGCT TCTCAGAGGT GTACGCCAGC ATTTTGATAG GTTTATCAAG GACCTAAAGC CTGGTGATCT TGAAAAATCT CAGCTTGGAT TAGCTCACAG CTACAGCAGA GCCAAGGTGA AGTTCAATGT TAACCGAGTG GATAACATGG TTATTCAAGC TATTTTCCTT CTTGACACGC TTGACAAGGA TATCAATTCC TTTGCCATGA GAGTCAGGGA ATGGTATTCG TGGCACTTCC CTGAACTAGT GAAGATAGTC AATGACAACT ATCTTTACGC CCGCGTTTCA AAGATGATTG ATGACAAGTC AAAGTTGACT GAAGACCACA TCCCAATGCT TACTGAAGTC TTAGGGGATG AAGATAAGGC AAAGGAGGTT ATCGAAGCTG GAAAAGCATC CATGGGCCAG GATTTATCAC CGCTTGACTT GATCAACGTT CAGACATTTG CCCAGAGAGT TATGGACCTT GCTGACTACA GGAAGAAGCT CTATGATTAT CTTGTCACTA AGATGAGCGA CATTGCCCCT AATTTGGCAG CTTTGATTGG AGAGATGGTC GGTGCCCGTT TGATTTCACA TGCTGGAAGT CTGACTAACC TTGCTAAATG CCCATCTTCT ACCCTCCAGA TCCTTGGAGC CGAGAAGGCA CTTTTCAGGG CGCTTAAAAC TCGTGGAAAC ACTCCCAAGT ATGGGTTGAT TTTCCATTCT TCCTTCATTG GCCGAGCATC TGCTAAGAAC AAGGGCCGTA TTGCTCGCTA TCTTGCAAAC AAGTGCTCTA TAGCATCCCG GATTGATTGT TTTGCTGATG GTGCAACTAC TGCCTTTGGT GAGAAGCTTC GCGAACAAGT TGAAGAAAGG CTAGAATTTT ATGACAAAGG TGTTGCCCCA CGCAAGAACG TGGATGTAAT GAAGGAGGTG ATAGAGAATC TGCAAAAGCA AGACGAGGAA GGGAAGGAGC CAGTGGAGGC CTCGGTGAAG AAAAGCAAGA AGAAGAAGGC AAAGGGTGAA GAGGAAGAGG TGGTGGCAAT GGAGGAGGAC AAGTCAGAGA AAAAGAAGAA GAAAGAGAAG AGGAAGATGG AGACAGCAGA GGAGAATGAG AAATCAGAGA AGAAGAAGAC AAAGAAGAGT AAAGCTGGAG GAGAAGAGGA GACTGATGAT GGTCACAGCA CCAAGAAGAA GAAGAAGAAG TCTAAGAGCT CTGAATAGAG AGGGATGCAA CATAACATAC CCTGTATTGT ATTTTTTTTT GAGCTAAATT AATGTCGTCT GTTTTTCGTA GTGAACTTTG GATAATTTTT GTTTTGCCCT GGAAACGATG CAAGATTTGG CAATATCTTA AGTTTGTTTA GGTTTTCAC 
Length1749
Protein Sequence
Protein Residue
Map Locationscaffold_1: 28213060.. 28215589
Download Sequence
A.thaliana
AGI-codeAT1G56110.1
Descriptionhomolog of nucleolar protein NOP56
TAIR curator summaryNOP56-like protein
Alias[NOP56][homolog of nucleolar protein NOP56]
Gene coexpression
MR
MR Locus Description
1.41421 Ahg486159 homologue of NAP57
4.47214 Ahg311847 GTP binding Elongation factor Tu family protein
7.14143 Ahg928085 NOP56-like pre RNA processing ribonucleoprotein
10.3923 Ahg496255 evolutionarily conserved C-terminal region 3
12 Ahg488362 Ribosomal protein S4
12.0416 Ahg347994 breast basic conserved 1
12.6886 Ahg312479 semialdehyde dehydrogenase family protein
13.4164 Ahg478548 RNA binding;RNA binding
14.0712 Ahg483090 Transducin/WD40 repeat-like superfamily protein
15.7797 Ahg926602 40s ribosomal protein SA
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression