Detail


ID : Ahg477055

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|477055|fgenesh2_kg.2__2185__AT1G78900.1
Sequence
ATCTACGTGC ATCCACCTCT CTCTTCTTCT TGTGACCACT CTTCCTGTCT GTTCACTGGA GGTGAATTTT AATTTCTTTG GCCGATCGGA TTTGAGTTTT TGAATCTCTG ATTGCTGAGA AAATGCCGGC GTTTTACGGA GGAAAGCTTA CGACCTTCGA GGACGATGAG AAGGAGAGCG AGTATGGTTA CGTTCGTAAG GTTTCAGGGC CTGTTGTTGT CGCCGATGGT ATGGCCGGTG CTGCTATGTA TGAGTTAGTG CGTGTTGGGC ATGATAATTT GATTGGTGAA ATCATCCGTC TTGAAGGAGA TTCTGCCACC ATCCAAGTTT ACGAGGAAAC AGCTGGATTG ACAGTTAATG ATCCCGTTCT TCGAACACAC AAGCCACTTT CTGTGGAGCT CGGGCCAGGA ATACTGGGAA ATATCTTCGA TGGAATTCAG AGGCCTTTGA AGACAATTGC AAGAATATCC GGTGATGTGT ACATCCCTCG TGGTGTGTCT GTCCCAGCTC TTGACAAAGA TTGTCCTTGG GAGTTCCAGC CCAATAAATT TGTCGAGGGA GACACAATAA CTGGTGGTGA CTTGTATGCT ACTGTCTTTG AGAACACTTT GATGAATCAC CATGTTGCCC TTCCTCCTGA TGCCATGGGG AAGATCACTT ACATTGCTCC AGCTGGTCAA TATTCCCTTA AGGATACAGT GATAGAGCTT GAGTTCCAGG GTATCAAGAA ATCTTACACC ATGCTTCAGA GCTGGCCTGT ACGTACGCCT AGGCCAGTTG CATCAAAGCT TGCTGCCGAT ACTCCTCTAC TTACGGGGCA GCGTGTCCTT GATGCCCTTT TCCCTTCGGT TCTTGGTGGA ACCTGTGCCA TTCCTGGTGC TTTTGGCTGT GGGAAAACTG TTATCAGTCA GGCACTTTCC AAGTACTCCA ACTCCGATGC TGTTGTGTAT GTTGGTTGTG GAGAGAGAGG AAATGAAATG GCTGAGGTTC TTATGGACTT CCCACAATTG ACAATGACAT TGCCTGATGG CCGTGAGGAA TCTGTCATGA AACGTACTAC ACTTGTTGCC AACACCTCTA ACATGCCTGT GGCTGCTCGT GAAGCCTCAA TTTACACAGG AATCACAATC GCTGAATATT TTAGAGATAT GGGATACAAT GTTAGTATGA TGGCAGACTC AACTTCCCGT TGGGCAGAAG CATTAAGAGA AATTTCAGGA CGGCTGGCTG AAATGCCTGC CGACAGTGGG TATCCCGCCT ATCTAGCAGC ACGTTTAGCA TCTTTCTATG AACGTGCTGG TAAAGTAAAA TGTCTCGGTG GACCAGAACG TGATGGAAGT GTCACAATTG TTGGTGCTGT TTCACCTCCT GGAGGAGACT TTTCAGATCC TGTGACTTCG GCAACCCTTA GTATTGTGCA GGTCTTCTGG GGTTTGGACA AAAAGCTTGC CCAGAGAAAA CATTTTCCTT CTGTTAATTG GTTGATTTCC TACTCTAAGT ATTCAACGGC CTTGGAAACT TTCTATGAAA AGTTTGATCC AGATTTCATC ACCATCAGGA CAAAGGCCAG AGAGGTGTTG CAGAGGGAAG ACGATCTTAA TGAAATTGTC CAGCTTGTAG GAAAAGATGC GCTAGCAGAA GGTGACAAAA TCACCTTGGA AACAGCTAAG CTATTGAGGG AAGACTACCT TGCTCAAAAC GCGTTTACAC CATATGACAA ATACTGCCCT TTCTACAAGT CGGTCTGGAT GATGCGTAAC ATTATCCATT TCTACAACCT AGCCAACCAG GCGGTTGAGA GAGCAGCTGG AATGGACGGT CAAAAGATTA CTTACACTCT CATCAAGCAT CGCTTGGGAG ATCTTTTCTA CCGTTTAGTG TCTCAGAAGT TCGAAGACCC AGCAGAAGGT GAGGATACAC TGGTGGCAAA ATTTAAGAAA TTGTATGACG ATCTCACTGC TGGATTCCGT GCCTTGGAGG ATGAAACTCG GTAAGCTGTC GGTCTCCACC GCAAGTCTAA AAATCCACAG AATTGGGTTG TTTTTGGAGA AAGAGGGTTT CATTCATGTT CTCTTTCTTG TGTTTTTGAA CCAACAACTA TCATAGTGGT CGGTATTTTA TTTATCGGTT TGTTTGATCG ATTGAGTTAT AGCTCTGTGA GCGTCATGAT TCTCCGGCTG TGCTGTGCTG TGTAATATGT TTGATTCGTT GTTTTTATGT TTTTTATTTC GATGGTAATA AGGTACAGCC AATGTGGGAC ATATATTTGA TTTGATGTAC CCTATCATCA ATTCAATAAG TTAATTATAT AATGTCCAAA CCTATTGGGG ATACAGTTAT TTTTCTCATA ATAAATACCA TCATTTTGTA
Length2370
Protein Sequence
Protein Residue
Map Locationscaffold_2: 17347496.. 17352445
Download Sequence
A.thaliana
AGI-codeAT1G78900.1
Descriptionvacuolar ATP synthase subunit A
TAIR curator summaryEncodes catalytic subunit A of the vacuolar ATP synthase. Mutants are devoid of vacuolar ATPase activity as subunit A is encoded only by this gene and show strong defects in male gametophyte development and in Golgi stack morphology.
Alias[VHA-A][vacuolar ATP synthase subunit A]
Gene coexpression
MR
MR Locus Description
3 Ahg947400 NADH-ubiquinone dehydrogenase, mitochondrial, putative
3.16228 Ahg902422 Late embryogenesis abundant protein, group 2
6.48074 Ahg924144 Ribosomal protein S5/Elongation factor G/III/V family protein
9.16515 Ahg478454 Clathrin, heavy chain
10.9545 Ahg926404 Phosphoglucomutase/phosphomannomutase family protein
12.49 Ahg918728 mago nashi family protein
15 Ahg471438 vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3)
15.748 Ahg947009 selenium-binding protein 1
16.7332 Ahg888595 ATPase, F0/V0 complex, subunit C protein
18 Ahg489476 catalytics;carbohydrate kinases;phosphoglucan, water dikinases
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression