| Annotation |
|---|
| Description | jgi|Araly1|477381|fgenesh2_kg.3__82__AT3G01320.1 |
| Sequence |
TAGAAAGTAG GTCTCATACA TAGGGAATTT TGATCCTCTG CTACGTTAAT TAACTTTAGA TGAAGCGGAT AAGAGATGAT GTCTATGCCT CTGGGTCTCT GGCTTCTTCT CGAGCCCAAT TACATGGACA ATCTCCGGTC CCCGGCAGTG GTGACACCGA ACGAGGAGGG AGAATGGCTG GTGGGGAAAT TACTTGTCAG AAATTGACAA CCAATGATGC CTTGTCGTAC CTGAGGGAAG TAAAAGAGAT GTTTCAAGAT CAACGGGAGA AATATGACAG GTTCCTCGAG GTTATGAAAG ATTTTAAGGC TCAAAGAACC GACACAGGCG GTGTCATTGC AAGAGTTAAG GAATTGTTTA AGGGACATAA TAATTTGATA TATGGATTCA ACACCTTTTT GCCTAAGGGA TATGAAATAA CGCTTATTGA GGAGGAAGAC CATGCTCTGC CAAAGAAGAC TGTTGAATTC GAAGAAGCCA TCAATTTTGT CAATAAAATT AAGAAGCGAT TCAAGCACGA TGAACATGTC TATAAATCTT TCTTGGAAAT CTTGAATATG TACCGCAAGG AGAACAAGGA AATTAGTGAG GTGTACAACG AGGTATCTAT TCTTTTTGAA GGCCACTTGG ATTTGCTTGA AGAGTTTACT AGGTTTCTGC CAGCGTCTTT GCCCTCTCAT TCAGCAGCGC AGCATAGCCG GAGTCAGGCT CAACGGTACA ACTACGGAGG ATCAGGCCCT CCTCTAATTC ATCAAATGCA AGTGGAAAAG GAACGCCGAC GAGAAAGGGC TGTTGCTTCC CGCGGGGATT ATAATGTTGA ACGTTATGAC CTTAATGATG ATAAAACAAT GGTGAAGATG CAAAGAGAGC AGCGGAAGCG TTTTGATAAG GAGGATAGGG CAAGGAGGGG CTGTGATTTG GACGATAGAG AAGCAGAGCA AGATAACCTA CACCATTTTC CAGAAAAAAG GAAGTCGTCC AGAAGAGCTG AAGGTCTTGA AGCATATTCT GGTTCTGCTT CACATTCTGA GAAAGACAAT TTGAAAAGTA TGTACAACCA AGCATTCGTT TTCTGTGAGA AAGTCAAGGA GCGACTATGC AGCCAAGATG ATTATCAGAC ATTCTTGAAG TGCCTCAATA TTTTTAGCAA TGGAATAATC CAAAGGAATG ATCTGCAAAA TTTGGTTTCT GATCTTCTTG GGAAATTTCC TGATCTAATG GATGAGTTCA ACCAGTTCTT CGAGCGGTGT GAGAGTATTG ATGGATTTCA ACACCTTGCT GGTGTTATGA GCAAAAAATC ATTTAGCAGT GAACTGTTAT CCAGACCAGT GAAGGTGGAA GAGAAAGAAA GTGAACATAA ACCTGACCTC GAGGCTGTTA AGGAAACCGA GCAATACAAG GAGGAGTACA TGGGAAAATC TATTCATGAG CTTGATCTCT CTGATTGCGA GTGTTGCACT CCTAGCTACC GGCTTCTCCC TGCTGATTAT CCGATACCAA CTGCGAGTCA GAGATCGGAG CTAGGAGCTG AGGTTTTAAA TGATCATTGG GTGTCTGTCA CTTCCGGAAG TGAAGATTAT TCTTTTAAGC ACATGCGCAG AAACCAATAT GAAGAGAGCT TGTTCAGATG CGAAGATGAT AGATTTGAGT TGGATATGTT GCTGGAATCT GTGAGCTCTG CGGCCAGAAG TGCAGAAAGT TTGTTGAACA TCATCACAGA GAAGAAAATA AGTTTTTCTG GCTCCTTCAG GATCGAAGAC CATTTTACGG CCCTAAATTT AAGGTGTATT GAGAGACTTT ATGGCGACCA TGGTCTTGAC GTGATAGACA TATTACATAA GAATTTAGCC ACTGCACTTC CTGTAATCCT AACTCGTTTA AAGCAGAAAC AAGATGAATG GAAGAAATGC CGTGAAGATT TTGATAAGGT CTGGGCGAAC GTATATGCGA AAAACCATTA CAAGTCACTT GATCACCGCA GCTTCTACTT CAAACAACAA GATTCAAAGA ACTTGAATGC AAAATCATTG GTGGCTGAAA TTAAGGAGCT GAAAGCGAAG TCTCAGAATG AGGATGATGT TCTGTTGTCT ATTTCTGCTG GTTACAGACA ACCCATAAAT CCTAATCTTG AATATGAGTA TTTCAACAGA GCTATTCATG AAGACCTGTA CAAACTAGTC CAGTTTTCAT GTGAGGAGTT ATGTTCTACA AAGGAACAGC TCAGTAAAGT TCTGAGGCTT TGGGAAAATT TCCTGGAGGC AGTGCTGGGT GTTCCTTCCA GGGACAAGGG CGCAGATCTT GTTGAAGATG TTGTGATAAA ACCCAAGACT CTCGATGTGA ATCACAGTAC ATCTACTAAC GGGGAGTCTG CTGTGAGTTC TGGAGCAGAC ACAGCAAGGT TGGCTTCTAG GAAACTAAAA TCTGCTGCCA ATGGAGATGA GAATGCTTCA TCTGGGCCAA TTAAACATGG TGGCATAGGT TTGGTAAATA AGGATTCGAC AGGAAAAGAA AATCTTAAAG ATGCTGATAC AGCCAACAGA GATGGTGACA CCTGTTCTGC TGTGAAACCC CAGAAAGAAC GAGAGACTGG AAATGAAGCC GATAAAAGAG TTGTAAAGCC TATCCCGATG GATATTTGTG AAAGAGCAGC CACCTCGAGT TTATCAATCC CAAGTGGAGG AGAAAACAGT CATTGTGTAG TAGGAAAGGA AGATTTGGCA GGTTCACATG AGATTCAAGC CAAACCAAGC AACACCTTCA CTGATATTCA TCATGATGTA GATAGCATTG AAACGGTTCA TTCGACTCAG GGAGGTGATG TTGGCAAGTC GATAGTTTTG GCAAATGGAT TAAGGTCAGA TTCTTCTAAA GGTACTAGGA ATTCTGATGA ACCCGAAGGT TCCTCCAGAA TTGAGAAGGA GGAAGGTGAA CTCTCACCTA ATGGTGATTT TGAAGACAAC TTTGGTGTGT ACGAAGATCT TGAGGTGAAG TCCACATCCA AACCAGAGAA TTCAGCAGAT GCTGAAGTAG AGGCAGATGC TGAAATAGAG AATGAGGATG ATACTGACGA TGATGATGGT GAAAATGCTT CCGAGGGTGG TGAGGATGCA TCTGGAACTG AATCTGGTGG CAATGAATGT TCCCAGGACG AAAACAGAGA GGAGGAGAAT GGTGAGGATG ATGAGATTGA TGGTAAAGCT GAGAGTGAAG GGGAAGCGGA GGGAATGGAT CCACATCTCT TAGAAGAAGA CAGTGAGTTG CTTCCTCAGT CAGAACATGT TCTCTTATCC GTCAGACCCC TTTCAAAGCA TGTAACAGCA GTTTTACGCG ATGAGAGGAC AAAAGATCTC CGAGTTTTCT ATGGGAATGA CGATTTTTAT GTTCTTTTTA GGCTTCACCA AATCCTGTAT GAGAGAATTT TGTCTGCAAA AAGGAATTGT TCAGGCGGTG AACTGAAATC GAAAAACTCA AAGGATACCA ATTCCCAAGA TCCTTATGCG AGGTTTATGA GGGTTTTGTA TCGTTTGCTT GATGGATCAG CTGAAAATAC CAAGTTTGAG GATGAGTGCA GAGCTACAAT TGGAAATCAA TCATATGTGT TATTCACGTT GGACAAACTG ATATACAAAT TGGTTAAGCA GCTTCAAGCT ATTGTAGCTG ATGAAATGGA CAACAAGCTA CTTCAGTTGT ATGAGTATGA GAAATCCCGG AAATCCGGAA GGGTTATCGA CTCAGTGTAT TATGAAAATG CCAGGGTCCT CCTTCACGAG GAAAATATTT ACCGGTTGGA ATGTTCATCC TTGCCATCAC GTTTATCTAT CCAGCTTATG GATAACATAA TAGAGAAGCC AGAAGCATAT GCAGTTTCTA TAGATCCCAC ATTTGCAAGT TATATGCAAA AGGAGTTTCT TTCCACCTCG TCAGGAAAGA AAGAGCAGGG ACATGACATT GTATTACAAA GGAACCTGCG TCCATACACC GGGTTGCATG ATCTTGCAGC ACTCTGTAAA GCTATGGAAG GTGTCGAAGT AGTAAATGGC TTGGAATGCA AGATGTCTTG CTCTTCGTAC AAGATCTCAT ACGTATTGGA CACAGAGGAT TACTTCCACA GGAAGAAGAA GAAAAAGAAG ACTGAACAGT CACCGCAACG TAACAAAGTT AGAGTAGAAA GGTTCCATAG GTTTCTCTCA GCTTAAAGAT GGCCACAACA AAGTTTCCTC TTGGGGTTTC AACACACAAG AAAAAGGTAA AACTGACAAA GTTGCACAAG TAAAGTTCTC TGCAACAAGT CCCAACTTTG GTTTTCAGAT TTCTTACTAT GCTGATTATA AGATGAGATA TAGAGAGATG CACAAAGTGG AGAACAAAAC CATAAGAAGA ACAATGGTGG TTTAGTGTTT CTATGTGTAT CTTTAGGTTT CAAGTGTCAA GTCTGTTAGT GTTAAATGTA GTGTGTATGT GTGTGCACTC TTGAGGAGAT TGTTGTTGTA AATTTGGGAA AGCCCTTGAA AATGCCTTGG TTAATAGATT TATAAGCCCA AAGGAAAAAT TATTTTTATA TGCTTCCAAT TTCAAGATTA |
| Length | 4580 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 287793.. 294849 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G01320.1 |
| Description | SIN3-like 1 |
| TAIR curator summary | Encodes SIN3-like 1, a homolog of the transcriptional repressor SIN3 (AT1G24190). |
| Alias | [SNL1][SIN3-like 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.16228 |
Ahg315745 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
| 3.16228 |
Ahg472338 | squamosa promoter binding protein-like 14 |
| 3.74166 |
Ahg492396 | RAB geranylgeranyl transferase alpha subunit 1 |
| 5.19615 |
Ahg496442 | Galactosyltransferase family protein |
| 5.47723 |
Ahg479495 | |
| 5.65685 |
Ahg491819 | protein kinase family protein / WD-40 repeat family protein |
| 6 |
Ahg486680 | Protein with RING/U-box and TRAF-like domains |
| 7.07107 |
Ahg920705 | Putative integral membrane protein conserved region (DUF2404) |
| 7.07107 |
Ahg920663 | B-block binding subunit of TFIIIC |
| 9.74679 |
Ahg915150 | Protein kinase superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|