Detail



ID : Ahg478619

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|478619|fgenesh2_kg.3__1320__AT3G12610.1
Sequence
ATATCAAACA TTTATTTTAA AAATGAGAAA GTTGTTAGCA TCGCCGTTTA GTTCATTACT CGCCGTAGTT TTCATTTCCG TCATCTCCGT CGTCCGATGC TGCTCTCCTG AAGATCAGAC GGCTCTCAAT GCTTTCAAGT CATCACTGAG CGAACCAAAC CTAGGCATCT TTAACACTTG GTCTGAAAAC ACTGACTGTT GCAAGGAATG GTACGGTATT AGCTGCGATC CTGATTCGGG TCGGGTCACT GATATTTCTC TCCGGGGAGA ATCTGAAGAC GCCATTTTCC AAAAGGCAGG CCGGTCCGGT TATATGTCCG GTTCGATTGA TCCATCGGTT TGTGACTTAA CCGCACTCAC TTCCCTCGTC CTCGCCGACT GGAAAGGAAT CACCGGAGAG ATTCCTCCGT GCGTAACCTC ATTGGCTTCT CTCCGTATCT TCGACCTCGC CGGCAACAAG ATCACCGGAG GGATTCCCGC GGAAATCGGC AAACTCTCAA AACTCGCTGT TCTAAACCTC GCGGAGAATC AGATGTCCGG CGAGATTCCG TCGTTGCTGA CGTCACTCGT CGAGTTGAAG CATCTTGAAT TGACGGAAAA CGGAATCACC GGCGTGATCC CGGCCGACTT CGGATCGTTG AAGATGCTGA GCAGAGTTTT AATGGGCCGT AACGAGCTAA CCGGGTCAAT ACCAGAGTCG ATCTCGGGTA TGGGACGGTT AGTGGATCTG GATCTATCCA GGAACCATAT CGAAGGTCCG ATACCCGAAT GGATGGGTAA CATGAAGGTA CTCTCACTTT TGAATCTCGA TTGCAATTCG TTAACCGGTT CAATCCCCGG TTCGCTTCTT AGCAATTCCG GTTTAGATGT TGCGAATTTG AGCAGAAATG CGTTGGAAGG ATCTATACCC GACGTTTTCG GGTCAAAAAC GTATTTAGTT TCGCTTGATT TGTCCCACAA TAATCTATCG GGTCGGATCC CGGATTCGTT GTCGTCAGCT AAGTTTGTGG GACATTTGGA TATTAGCCAT AACAAGCTTT GTGGGCGTAT CCCAACGGGT TCTCCTTTTG ATCACCTTGA AGCCACGTCG TTTAGTGACA ACCAATGTCT CTGCGGTGGC CCTTTGATGA CGTTATGTTA ATAACAAGGA TATGGTTCCG GTTTTACTGA ACCGGGTTTC TTGTTGCTGT TGCTCTTGTT CGCTGTATCA AACTTGTGAT ATTTTACTTT TCATTTACTT TTCAGATTTT AGTTTTCACA GCTAATATAT GTTCTACTAC TGGCAACGGA CAGGTACACC GATCCAATAT GCTTTGCGGT TTATGTAAAA TGATTCCGAA TGTAATATTA AAAGCAACGT TATAGAAC 
Length1368
Protein Sequence
Protein Residue
Map Locationscaffold_3: 4777244.. 4778611
Download Sequence
A.thaliana
AGI-codeAT3G12610.1
DescriptionLeucine-rich repeat (LRR) family protein
TAIR curator summaryPlays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes.
Alias[DRT100][DNA-DAMAGE REPAIR/TOLERATION 100]
Gene coexpression
MR
MR Locus Description
8.66025 Ahg478021 Pectin lyase-like superfamily protein
9.32738 Ahg934869 expansin A8
14.6969 Ahg474334 Major facilitator superfamily protein
18.412 Ahg926846 Gibberellin-regulated family protein
19.4422 Ahg480587 pentatricopeptide (PPR) repeat-containing protein
21.3542 Ahg492392 HXXXD-type acyl-transferase family protein
24.8193 Ahg905007
25.3772 Ahg475937 B-box zinc finger family protein
26.8328 Ahg939651 Protein phosphatase 2C family protein
27.3861 Ahg484810 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression