| Annotation |
|---|
| Description | jgi|Araly1|484168|fgenesh2_kg.5__160__AT2G02560.1 |
| Sequence |
AGTACGGAAA ATTACAGTAT CTCCTCCTCC ATCTTTTTTA ACTTTCCTCA GAGCTCTCTC CTCTCCGCAA CTTCCACCAC CACCAAATCG GAACTCTCGG CGTTCTTACT CCGTCTCCGG CGTTGCCTCC GTCGATTTCA TCATCTCAGT TGGAAGGAGT GAATTGATAA GGACAGGCCA AGATGGCGAA CTTACAAGTG TCTGGGATAA TCGAAAAGGT TCAGATGACG GGTAAAGATA AAGATTATAG ATACATGGCA ACCTCTGATT TGCTTAATGA GTTGAATAAG GATTCCTTTA AACTCGACAC GGACTTGGAG ATGAGATTGT CGAGTATCAT ATTGCAACAG CTCGATGATG TGGCTGGTGA TGTTTCTGGA TTGGCTGTTA AATGTCTTGC TCCATTGGTG AAGAAGGTTG GAGAAGAGCG AATTGTCGAA ATGACCAACA AATTATGTGA TAAACTGTTG CATGGGAAAG ACCAGCACCG TGATACCGCA AGCATAGCTC TCAGGACTGT TGTCGCCCAA GTTACTCCGT CGCTTGCTCC ATCTATTCTT GTTACTCTAA CCCCACAAAT GATAGGAGGG ATAAGTGGCC AGGGAATGAG CTCAGGGATT AAGTGTGAAT GTCTTGAGAT CATGTGTGAT GTTGTTCAAA AATATGGAAG TTTAATGACG GATGATCACG AGAAGCTATT GAACACATTG CTATTGCAAT TGGGCTGTAA CCAAGCCACA GTCAGGAAGA AGACTGTTAC ATGCATTGCA TCTCTTGCCT CCAGTCTGTC TGATGATTTG CTCGCAAAGG CGACAGTTGA AGTTGTGAAA AATCTAAGTA ACAGGAATGC AAAATCTGAG ATTACACGTA CCAATATTCA AATGATTGGA GCTTTATGCC GTGCTGTTGG GTATCGATTT GGGACTCATC TAGGTAACAC AGTGCCAGTA TTAATCAATT ACTGCACCAG CGCTTCAGAA AATGACGAGG AGCTTCGCGA GTATAGCTTA CAGGCACTTG AAAGTTTCTT GCTACGATGT CCCAGGGATA TCTCACCATA TTGTGATGAA ATTTTAAATC TCACTTTGGA ATATATTAGT TATGACCCGA ATTTTACGGA CAACATGGAG GAAGATACTG ATAATGAGAC TCTTGAAGAT GAAGAAGATG ACGAGAGTGC AAATGAGTAC ACAGATGATG AGGATGCCAG CTGGAAAGTT AGGAGAGCAG CGGCGAAATG CCTAGCAGGA TTAATCGTTT CTCGTTCTGA GATGCTCGCT AAAGTATATC AAGAGGCCTG CCCGAAACTA ATTGATAGAT TTAAGGAAAG GGAGGAAAAT GTGAAGATGG ATGTATTCAA CACATTCATT GATTTGTTAC GGCAAACAGG AAATGTTACA AAAGGTCAAA CTGACACTGA TGAATCAAGT CCAAAATGGC TACTGAAGCA AGAAGTCTCA AAGATTGTAA AATCCATAAA TAGGCAACTG CGTGAAAAGT CTGTAAAGAC AAAGGTTGGT GCATTCTCCG TTTTGAGAGA ACTTGTTGTT GTCTTGCCTG ACTGCCTTGC TGATCATATT GGTTCACTTG TTCCTGGAAT TGAAAGGGCG CTAAATGATA AATCTTCTAC TTCAAACTTG AAAATTGAAG CTCTTGTCTT CACCAAATTA GTCTTGGCAT CACATGCGCC TCCTGTTTTT CATCCGTACA TTAAGGCTCT TTCAAGTCCT GTTTTAGCTG CTGTTGGTGA ACGCTATTAC AAGGTGACCG CTGAGGCATT AAGGGTTTGT GGGGAACTTG TCAGAGTAGT ACGCCCAAGT ACTGCGGGAA TGGGCTTTGA TTTTAAACCG TTTGTTCATC CAATCTACAA TGCGATAATG TCGCGGTTGA CAAATCAAGA TCAGGACCAG GAAGTCAAGG AGTGTGCTAT CACCTGTATG GGTCTTGTGA TTTCAACATT TGGTGATCAG TTGAGAGCAG AGTTACCTTC ATGCCTTCCT GTGCTTGTTG ATCGAATGGG AAACGAAATC ACTCGCCTCA CTGCAGTAAA GGCATTTGCA GTCATTGCCA CTTCTCCCCT TCACATTGAT CTATCATGTG TCTTGGACCA TTTGATTACT GAACTAACGG GATTCTTACG GAAGGCTAAT CGGGTTCTAA GGCAAGCAAC ACTGATTACT ATGAATACCT TGGTAACAGC CTACGGTGAT AAAATTGGCT CAGATGCTTA TGAAGTTATT CTTGTGGAGC TTTCATCTCT GATAAGTGTT TCGGACCTGC ACATGACAGC TCTTGCACTC GAACTCTGCT GCACTCTGAT GACTGGAAAG AGTTGTAGTG AAAATATCAG TTTGGCAGTT CGCAACAAAG TTCTTCCGCA GGCACTAACT TTAGTTAAAA GCCCATTGCT CCAGGGTCAA GCACTTTTGG ATCTGCAAAA ATTCTTTGAA GCTCTGGTGT ATCATGCAAA TACGAGTTTC TACACCTTGC TGGAATCATT GCTATCTTGT GCTAAGCCTT CTCCTCAGTC TGGAGGTGTC CCAAAGCAAG CATTATATTC AATTGCACAG TGTGTGGCGG TTCTTTGTCT CGCAGCGGGT GATAAGAATT GTTCGTCTAC TGTTAAAATG CTTATGGAAA TCCTTAAAGA TGACAGTGGC ACAAATTCAG CAAAACAACA TCTTGCCCTG TTATCTCTTG GTGAGATTGG GAGAAGGAAA GATCTCAGCG CACATGCTGG CATTGAAACA ATCGTCATTG AGTCTTTCCA ATCTCCGTTT GAAGAAATAA AGTCTGCAGC TTCTTATGCT CTTGGAAACA TTGCTGTTGG CAATCTATCC AATTATTTAC CTTTTATCTT GAACCAGATT GATAATCAAC AGAAAAAACA GTATATTCTC CTTCATTCAC TCAAGGAGGT TATTGTGAGG CAGTCTGTTG ATAAAGCGGA TTTTCAGAAT TCCAGTGTTG AGAAAATACT TGCTTTACTG TTTAACCATT GTGAAAGCGA GGAAGAAGGT GTAAGGAATG TTGTTGCTGA ATGCTTGGGA AAAATGGCTT TGATAGAGCC TGAGAAACTG GTTCCTGCTC TTCAGGTAAG GACGACGAGT CCAGCTGCTT TTACTCGTGC AACTGTTGTT ACCGCTGTGA AATATTCAGT AGTGGAACGA CCTGAGAAAT TAGATGAAAT CATCTTCCCT CAAATTTCTT CTTTCCTCAT GCTGATTAAA GATGGTGACC GGCATGTTAG GCGTGCAGCT GTCTCAGCTC TGAGTACTTT TGCTCATTAT AAACCAAACC TTATTAAAGG ACTTCTCCCT GAACTGTTAC CGCTTCTTTA TGATCAGACC GTTATTAAGA AAGAATTAAT TAGGACGGTT GATCTTGGCC CATTCAAGCA TGTCGTTGAT GACGGGCTTG AGCTGAGGAA AGCAGCTTTT GAGTGTGTGT TTACTCTGCT AGATAGCTGT CTTGATCAAG TGAATCCGTC TTCTTTCATT GTTCCTTTCC TCAAATCCGG ACTAGAAGAT CATTATGACT TGAAGATGCT TTGTCATCTT ATACTCTCTT TGCTAGCAGA TAAATCCCCC TCAGCCGTAC TTGCTGTACT GGATTCTCTT GTGGAACCAC TGCATAAAAC AATAAGCTTC AAGCCAAAGC AAGATGCAGT GAAGCAAGAG CATGATCGTA ATGAAGATAT GATCAGAAGT GCTCTTCGTG CTATATCATC ACTTGATCGA ATCAATGGGG TGGATTATAG CCACAAGTTC AAGGGCTTAA TGGGTGACAT GAAGAGGTCT GTACCGTTGT GGGAAAAGTT TCAGACAATC CGGAACGAGT AAGTTTTTGT GTATGTTGTC TATCGATGAT GATTTTTCTA TTCCAAGAAA AGGGTACAGC GAAAAAAATT CTGAATCGGC GAAAAAGATT TTTTTTAATA TATGCTTTCT TTCATTGGAC CTTTGTTTCT GTGTTGTTGC CT |
| Length | 3982 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 899706.. 906816 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G02560.1 |
| Description | cullin-associated and neddylation dissociated |
| TAIR curator summary | Arabidopsis thaliana homolog of human CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. Required for SCF function and appears to modulate SCF complex cycling. Physically interacts with CUL1. |
| Alias | [ATCAND1][CAND1][ETA2][HVE][TIP120][CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1][cullin-associated and neddylation dissociated][HEMIVENATA] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.73205 |
Ahg485401 | CDPK-related kinase |
| 4.58258 |
Ahg495856 | adenosylmethionine-8-amino-7-oxononanoate transaminases |
| 5.19615 |
Ahg486396 | ENTH/VHS family protein |
| 7.34847 |
Ahg482629 | demeter-like 1 |
| 11.3137 |
Ahg488288 | Pseudouridine synthase family protein |
| 12.49 |
Ahg482091 | ARM repeat superfamily protein |
| 13.0384 |
Ahg903463 | Homeotic gene regulator |
| 13.4907 |
Ahg494702 | regulatory particle triple-A ATPase 4A |
| 18.303 |
Ahg331828 | |
| 18.6548 |
Ahg940006 | RP non-ATPase subunit 8A |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|