| Annotation |
|---|
| Description | jgi|Araly1|485482|fgenesh2_kg.5__1474__AT3G51310.1 |
| Sequence |
GAAAATTCGG TCAAAATTGA GACTTTCTCT GTAGAGTAAA GTAGTGAGAA ACAGAATGAT CGCCGACGAC GATGAGAAGT GGCTTTCCGC CGCCATCGCC GCCGTTAAGC AAAATGCTTT CTATATGCAG CGCGCTATCG ACTCCAACAA TCTGAAAGAC GCTCTAAAGT TTTCTGCTCA AATGCTCAGC GAGCTTCGTA CTTCCAAGCT TTCTCCTCAT AAATACTATG AACTCTATAT TCGAGTTTTT AATGAACTGG GGACTTTGGA GATATTCTTC AAGGAAGAGA CAGGGCGCGG TTGCTCCATT GCGGAGCTTT ACGAGTTAGT GCAGCATGCC GGTAACATTT TGCCAAGATT GTATCTTCTC TGTACCATAG GATCTGTATA TATCAAATCC AAGGACGTTA CTGCTACGGA TATACTTAAG GATCTTGTTG AAATGTGTCG AGCTGTTCAA CATCCTTTAC GTGGTCTTTT CTTGCGAAGT TATCTTGCTC AAGTTACTAG GGATAAGTTA CCCAGCATTG GTTCTGACTT GGATGGAGAT GGTGATGCAC ACATGAATGC TTTAGAGTTC GTGCTTCAAA ATTTTACCGA GATGAACAAA TTATGGGTTC GAATGCAACA TCAGGGACCT AGTCGGGAGA AGGACAAACG GGAGAAAGAA AGGAATGAAC TACGTGATCT TGTTGGGAAG AACCTTCATG TACTGAGTCA GTTGGAAGGT GTTGACCTTG GAATCTACAG AGATACTGTT CTTCCTAGAA TACTGGAGCA GGTTGTCAAC TGTAAGGATG AACTTGCACA GTGCTACCTA ATGGATTGCA TTATTCAAGT CTTTCCTGAT GATTTCCACC TTCAAACTCT CGATGTATTA TTGGGTGCTT GTCCACAACT TCAGCCATCT GTTGATATCA AGACGGTCCT TTCGGGTCTA ATGGAAAGGC TTTCGAACTA TGCTGCATCC AGTGTGGAAG CGTTGCCTAA TTTCCTGCAA GTAGAAGCCT TTTCAAAGTT AAATTATGCC ATTGGGAAGG TTGTAGAAGC ACAGGTGGAC TTGCCGGCCG CAGCATCTGT AACATTGTAT TTGTTTCTTC TGAAATTCAC TCTCCATGTC TATTCCGATC GTTTGGACTA TGTAGACGAA GTTTTGGGAT CTTGTGTTAC TCAACTATCG GCCACAGGAA AGCTTTGTGA TGACAAGGCA GCAAAACAGA TCGTCGCATT TCTTAGCGCT CCGTTGGAAA AGTATAATAA TGTTGTAACT ATCTTGAAGC TCACAAACTA TCCTCGAGTA ATGGAATACC TTGACCATGA GACAAACAAA GCAATGGCAA TCATTATAGT TCAGAGCATT TTGAAAAACA ATACTCATAT TGCTACTGCT GATGAGGTCG ATTCATTGTT TGAACTGGCA AAGGGTCTCA TCAAGGATTT TGACGGAAAA GTTGATGATG AGATTGATGA AGAAGATTTC CAGGAAGAGC AGAACCTTGT TGCACGGCTT GTTCACAAGC TCTACAATGA TGATCCAGAA GAAATGTATA AGATTATTTT CACAGTAAGG AAGCACATCC TGGCTGGAGG ACCTAAGCGT ATGCCTTTAA CTATACCACC CCTTGTCTTT TCCGCTCTCA AGTTAATTCG GCGACTGAGA GGTGGAGATG AAAACCCATT TGGAGATGAT GCATCAGCAA CACCGAAGAG AATTCTACAG CTTTTAAGTG AGGCAAGTAC CGTGGAAGTT CTATCTGATG TTTCCGCACC TGATTTGGCA TTGCGCCTCT ACTTGCAGTG TGCTCAGGCA GCAAATGACT GTGAGTTAGA AACAGTCACT TATGAGTTCT TCACAAAGGC ATATCTTCTG TATGAAGAAG AAATTTCAGA TTCAAAGGCA CAAGTAACAG CACTACGTTT AATAATAGGG ACACTCCAGC GGATGCGTGT ATTTAATGTT GAGAACAGAG ATACTCTGAC TCACAAGGCG ACAGGGTACT CTGCAAGACT CCTTAGGAAG CCAGATCAGT GTAGGGCTGT TTATGAGTGT GCGCATCTCT TCTGGGCTGA CGAATGCGAG AACCTAAAAG ATGGAGAGAG GGTTGTGCTT TGTCTGAAGA GGGCACAAAG AATTGCAGAT GCTGTTCAAC AAATGGCCAA TGCATCCCGT GGTACCAGTA GCACTGGGTC GGTGGCTCTA TATGTCGAAC TGCTGAACAA GTATCTCTAC TTCTTGGAGA AAGGAAACCC ACAATTAACA GGCGATACAA TCCAGAGCTT AGCTGAATTA ATCAGAAGCG AGACGAAGAA GGTTGAGTCA GAGCCGTTCA TAAATAGCAC TCTGCGTTAC ATCGAGTTTC AGAGACAGCA AGATGGCATG GATGAGAAAT ACGAGAAAAT CAAAATGGAA TGGTTTGAAT GAATTTCTTT CTTGCATTCT TTTTGGCACA TCATCAATAA TCATATGGCT TCTCGTCTTG TTGCAGAAGC ATGAAGAGTA ACCTTGAGAA ATAAAACTTG TATCATTACT TTTCTTTTAC TAGTTACACT CTCTCTACCA ATAAACATGT TTGCAAAGT |
| Length | 2579 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_5: 14719821.. 14724744 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G51310.1 |
| Description | VPS35 homolog C |
| TAIR curator summary | Homolog of yeast retromer subunit VPS35. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. |
| Alias | [VPS35C][VPS35 homolog C] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.4641 |
Ahg475254 | Clathrin adaptor complexes medium subunit family protein |
| 3.4641 |
Ahg949102 | E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein |
| 6.32456 |
Ahg936962 | BTB-POZ and MATH domain 6 |
| 6.48074 |
Ahg472693 | glycine-rich protein |
| 6.55744 |
Ahg488545 | binding partner of acd11 1 |
| 8.24621 |
Ahg495090 | Galactose oxidase/kelch repeat superfamily protein |
| 8.83176 |
Ahg473690 | PDI-like 5-2 |
| 8.94427 |
Ahg945436 | Uncharacterised conserved protein UCP022280 |
| 9.38083 |
Ahg938524 | GATA type zinc finger transcription factor family protein |
| 9.79796 |
Ahg926966 | Pathogenesis-related thaumatin superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|