| Annotation |
|---|
| Description | jgi|Araly1|486909|fgenesh2_kg.6__43__AT4G00020.1 |
| Sequence |
GGCGAAGTTT AGTTCTCCGG CTGAATCAAT TTACGACGAA TCGGAAAAAG TCGATACCCT AGAACTGAAT AAATGTCGAC GTGGCAATTA TTTTCCGATT CCAGCGGCGA TGGTTTCCGG TGGGAAGTCG CTGGCCGGAT TCTCCAGTCC GACTCGGATT CTACTCCAAC CAAGGCGCTC GAATCCACAG CTCCTCTACC TTCCATGGCC GATCTCTTGC TCCAAGGATG CTCGAAGCTT ATAGAACGGG AGGAAGCGCT GCCTGGGGAA ATCCCAATGT TCAGGACTGG TCTGGGGAAG TCTGTACCTC TAAAAGAATC TTCCATTGCT AAAGCCAAAT CCCTTTTAGC AGATTCAGGT ACTTTTTTAG ATTTGCAGAA CACTAATTGC TCAAATCCCC AAATGAGACA AGTGGATTCA GCTGAAACTT TGCCTATGTT CAGGACGGCC TTGGGGAAAT CTGTCCCTTT GAAAGAGTCT TCAATTGCCA AAGCTTTGTC TATTCTGGCA AGTGATAAGA TTATTGACTC AGACTACGTT CTTCCCAGGG AGAGTGGGTT TGGTGTGCCC AACACGCTTT TTCAAACAGC TTCTAACAAG AAGGTTAATG TATCTTCTGC CGGTTTAGCA AGAGCCAAGG CATTGCTAGG ACTAGAAGAA GATGATTTGA ATGGATTTAA CCATGTGAAC CAGTCGTCTT CTTCCCTCCA GCAACATGGG TTGTCCGTTT TAAAAACTCA TGAGGAGTTT GACGCTACAG TGGTTAAGCA TCATTCAGGA ACTCCAGGAC AATATGAGGA TTATGTATCT GGGAAGAGAC CTGAAATCTT AAATCCATCT TTAAAGGTGC CTCCAACAAA GTTTCAGACT GCTGGTGGAA AATCATTGTC AGTGTCTGCT GAGGCGTTGA AACGTGCCAG AAACCTTCTT GGTGACCCTG AGTTAGGGTC TTTCTTTGAT GATGTGGCTG GAGGTGATCA ATTTGTTACA CCACAGAAAG ATGAAAGGTT AGGTGATATT GCTATAAACA ATGGAAGTGC CAACACAGGT TATATTGCTC ATGAAGAAAA GTCAAGCAAC AAACATACGT CAAATAGTTT TGTATCTCCT CTTCGGTCAT CTTCAAAGCA ATTTAGATCA GTCAACTTGG AGAACCTAGC TTCAGGGGGT AATTTGATCA AGAAATTTGA TGCAGCTGTT GATGAGACAG ACTGTGCTCT GAATGCTACA CATGGACTAT CAAATAACAA GCCTATAGCA TCTAATATGG CAGTGACTAA TTCCAAGGAA AACGGTTTCA TTCCAAGAGG TAGGCAATTT GGAAGGCCAG CTGACCAGCC GCTTGTCGAT ATAACAAATC GCAGTGATAC AGCTTATGCA AACATTAAAC AAGATAGTAC CCAAAAGAAA AGGCTGGGAA AGACAGTCTC CGTTTCTCCT TTCAAAAGGC CAAGGATTTC ATCCTTTAAA ACTCCTTTAA AGAAAAATGC TCAGCAAGCT TCAAGTGGTT TGTCTGTCGT ATCGTGTGAT ACACTTACTT CCGAAAAGGT GCTTTCTACA AGATACCCAG AAAAGTCTCC AAGAGTATAT ATCAAGGGTT TTTTTGGAAT GCATCCAACA GCTACGACCA AGATGGATAA TGTGCCAGAC CATGTCAGAA GAATCAAATC AAGTAATGCA GATAAATATG TATTCTGTGA TGAGTCTTCT TCAAACAAGG TTGGAGCTGA AACTTTTCTT CTAATGTTGG CTGAGTCTGG TGCTTCCTTA CAACATGCAT CCAGAAAGTG GGTCACTAAT CACTACAGGT GGATAGTCTG GAAACTTGCA TGCTATGACA TATACTACCC AGCCAAATGC AGAGGAAACT TTCTGACAAT CACCAATGTT CTTGAGGAAC TAAAATACAG ATATGAGAGA GAGGTCAATC ATGGTCATTG CTCTGCAATC AAGAGGATTC TGAGTGGTGA TGCTCCAGCT TCTTCAATGA TGGTGCTCTG CATATCAGCT ATTAATCCAA AGACCGATAA TGATTCTCAG GAAGCACATT GTTCTGATAT TTGCAGCAAT GTGAAAGTAG AACTCACTGA TGGGTGGTAC TCGATGAATG CTGCTCTGGA TGTCGTGCTA ACAAAGCAGC TGAATGCTGG CAAATTGTTT GTCGGGCAGA AGCTTCGAAT CATCGGGGCA GGACTTTCTG GCTGGGCTAC CCCAACATCA CCACTTGAGG CAGTGATTTC AAGTACAATC TGTTTGTTGT TGAATATTAA TGGGACATAC AGAGCTCACT GGGCGGACCG ACTAGGCTTC TGTAAAGAAA CTGGTGTCCC TCTGGCTTTC AACTGTATCA AGTGCAATGG GGGTCCAGTG CCTAAAACGC TAGCTGGCAT CACACGAATA TACCCCATCC TATACAAGGA AAGGTTAGGT GAAAAGAAGT CAATAGTTCG ATCAGAGAGA ATGGAAAGTA GAATTATACA GCTGCATAAT CAGAGGCGCT CAGCTCTTGT TGAGGGTATT ATGTGTGAGT ACCAGAGAGG AATTAATGGT GTTCACAGCC AGAACGACAC TGACAGCGAA GAAGGAGCCA AGGTCTTTAA GCTGTTAGAG ACGGCTGCTG AACCTGAACT TCTTATGGCA GAAATGAGCC CAGAGCAGTT GACATCTTTC ACAACATATA AAGCAAAATT TGAGGCAGCC AAGCAAATGC AGATGGAAAA ATCAGTGGCA AAAGCTCTGG AAGACGCTGG TTTAGGTGAA AGGAATGTCA CCCCATTCAT GAGGATTAGG CTTGTTGGCC TGACGAGCTT AAGTTATGAA GGAGAGCACA ATCCAAAAGA AGGCATTGTA ACAATCTGGG ATCCCACGGA GAGACAGAGA ACCGAGCTGA CAGAGGGAAA AATATACATA ATGAAAGGGC TAGTACCAAT GAACTCAGAT TCAGAAACAC TTTACTTACA TGCCAGAGGG TCTAGCTCAA AATGGCAGCC TTTGTCTCAG AAAGATTCTG AAAATTTTCA GCCCTTTTTC AACCCTCGTA AACCAATCTC TTTGTCAAAT CTTGGTGAAA TTCCTTTTTC AAGTGAATTT GATATCGCTG CATACGTTGT ATATGTTGGA AATGCATACA CGGATGTTCA ACAAAAGAAG CAGTGGGTGT TTGTGACAGA TGGATCCACT CAACATTCAG GGGAAATCTC AAACAGTCTT CTTGCTATAA GCTTCAGCAC CCCATCCATG GAAGATAGCT CTATTTCCCA CATTAGCCAT AATTTGGTTG GATCCGTGGT CGGATTCTGC AATCTAATTA AAAGAGCAAA GGATGCGAAA AACAAAATGT GGGTTGGTGA GGCAACAGAG AACTCAGTCT ACTTCATAAA CGCAGAAGCT GCCTACTCTT CTCACCTCAA AACCAGCAGT GCCCATATCC AAGCCTGGGC TAAGCTCTCT TCTTCCAACA CCGTCATCCA TGAACTTCGG CAAACAGTCC TATCTATAAT CGGTGCTTGT AAATCACCTT CATGCTGAAG ATA |
| Length | 3533 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 168093.. 173981 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G01630.1 |
| Description | BRCA2-like B |
| TAIR curator summary | Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with with both Rad51 and Dss1(I) or both Dmc1 and Dss1(I) in a tripartite complex. |
| Alias | [ATBRCA2(V)][BRCA2(V)][BRCA2B][BRCA2-like B] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.31662 |
Ahg950033 | SPFH/Band 7/PHB domain-containing membrane-associated protein family |
| 6.32456 |
Ahg471532 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain |
| 16.7033 |
Ahg335256 | ATP binding microtubule motor family protein |
| 17.4642 |
Ahg472418 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein |
| 21.7715 |
Ahg490375 | Minichromosome maintenance (MCM2/3/5) family protein |
| 21.9089 |
Ahg935751 | SWITCH/sucrose nonfermenting 3A |
| 24.5764 |
Ahg904413 | phosphoesterase |
| 27.1662 |
Ahg477867 | |
| 30 |
Ahg491190 | squalene synthase 2 |
| 30.2985 |
Ahg480950 | minichromosome maintenance 10 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|