Detail


ID : Ahg935751

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|935751|scaffold_403739.1
Sequence
ATTGGAGGGA ATCGGCAACG GGCATGGAAG CCACTGATCC AAGCGCAGAG CTCGAGCTCT ACACCATTCC CGCTCAATCC AGTTGGTTCT TATGGGATGA TATCCACGAA ATTGAAAGAC GCGAATTTGA GGAGTTCTTC ACTGAGAGCT CAATCACTAG AACCCCCAAA GTTTACAAGG AGTACCGAGA TTTCATTATC AATAAGTTTA GAGAGGACAC TTCTCGGAGG CTCACCTTCA CCAGTGTCCG CAAGTTTCTC GTTGGCGATG TCAATTTGCT TCAGAAAGTG TTCCTCTTCC TCCAAAAATG GGGATTGATC AATTTTAGCT CTTCCCTCAA GAAAAGTGAT CATCTCTCGT CCGTGGATAG TGCTAAAATC GAACAAGGGA CTCCCGCTGG AATTCGAGTT ACTGCAACCC CTAATTCTCT GAGGCCTATT ACCGCACCGC CCCTTGTTGA GGAAACAACT GAGACTGGCA TCAAACTACC ACCGCTTACC TCTTTTTCAG ATGTTTTCAG CGATTTGAAG AAGCCGGATG ATGTATTGGT TTGTGGACAT TGTAGAGAAC GTTGTGATTC TCCTTTCTAT CGACATAACA AGAGTATTGT CAACATATGC GAAAACTGTT TCAAGAATGG AAACTATGGG GAGAACAATG CTGCAGATGA TTTTAAGTTG ATTGGGAATT CAGCTGCAGC TGTGTGGACC GAGGAAGAGA CCCTCCTCTT GCTAGAATCT GTGCTGAAAC ATGGAGATGA TTGGGAACTC ATTGCACAAA GTGTTTCTAC AAAGAGTAGA CTCGATTGCA TTTCGAAACT CATTGAGCTC CCGTTTGGAG AGTTTTTGAT GGGTCCTGCT TCTGGAAGGC TCATTTCCTC TATCCCCACC GAGGATGAAA ACGCGGAACA GGTGAAAACT GATGGTCAAG AACATGAGGA AACCGAGACA AGGGAAGAAA AAGAAGATCA CGTGGATGAA GACGAGCCTC AAGCAAAAAG GAAACGTGTT GCACTGATAT CAGACGGTGA TAGTTCACTT ATGAAACAGG TCGCTGCCAT GGCAAGTAAA GTTGGTCCAT CTGTCGCAAC TGCTGCTGCA AAAGCTGCTC TTGCAGCTCT TTGTGATGAA GCCTCATGTC CAAAAGAGAT TTTTGACACT GGTGATTACA CCAATTTCGC AGTTGACAGA GCTGATGGAG ACAAAGATAC AGATTTGGAG GAACAGCAAG AAGACAAAGA CGAGCCTCAG GGTCTACCTG TAGCATTAAG GATAAGAGCG TCAGTGGCAA CAGCTCTAGG AGCAGCGGCT GCACAAGCGA AAATACTGGC TGATCAAGAA GAAAGAGAAA TGGAACAGTT AGCTGCGACT GTAATAGACC AACAGCTCAA GAAACTGCAG AGCAAGTTGA AGTTTCTGGA CCACTTGGAA TCGATAATGG ATGCAGAAGA GGAAGTGATA GAGGGTGTAA AGGAAACAAT CATCCAAGAG AGGATTAGCG TTTTGCAATG CGCATTTCGT AGCGGGATTA CCAAACGTTG GGATCATACG TGCGTGAAAT GATCTCCTTT TTTCGCTTGG GG
Length1582
Protein Sequence
Protein Residue
A.thaliana
AGI-codeAT2G47620.1
DescriptionSWITCH/sucrose nonfermenting 3A
TAIR curator summaryHomologous to yeast SWI3 and a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3C, the other two members of the SWI3 family.
Alias[ATSWI3A][CHB1][SWI3A][SWITCH/sucrose nonfermenting 3A]
Gene coexpression
MR
MR Locus Description
8.48528 Ahg944393 Transducin family protein / WD-40 repeat family protein
10.3441 Ahg904413 phosphoesterase
17.3205 Ahg335256 ATP binding microtubule motor family protein
21.9089 Ahg486909 BRCA2-like B
22.5832 Ahg479673 transducin family protein / WD-40 repeat family protein
24.5357 Ahg496305 P-loop containing nucleoside triphosphate hydrolases superfamily protein
26.3439 Ahg940287 serine carboxypeptidase-like 35
26.8328 Ahg906059 Transducin/WD40 repeat-like superfamily protein
26.8514 Ahg920552 Tetratricopeptide repeat (TPR)-like superfamily protein
27.1109 Ahg485881
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression