Detail



ID : Ahg493254

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|493254|fgenesh2_kg.7__2687__AT4G16310.1
Sequence
ATGGATGGTA CGGGGAGGAA ATCTGGTTCC AAGAGAGGAT CTAAGGTTTT TCAGTTTGAC GATGATGCTG ATGATGATGA ACCTATCGGA TCTCTCTTAG AGATTATGAA GCATAAAAGT TCCAAGAAGG ATAAGGTTGA GACGGAAAGT ACTGGTAAAC AGAGGCAGAA ACAGGTTGTG GAAAAGAAGC TGAGTGCTTT GGACAAGGAT TCTGAAGATA TGGATGACAC CTTAGCCAGT TTTAGGAAGA GATTGAAGGG CAACAAGAAA GGTGTTGGAT CAGGAACCCC AAGAATTAGG AACCACGAGG GTGTTCCTCC TATTGATACT GTAGCAAATT CTAATTTGAA ACCAATTGAG GAAGGCAACA CAAACAAGGT GCAGAGTGTA TTACTTAGGG AAAATGGTGC TTCTAATTCT ATTCAAAAGT GTGCTTCAGA AACTGGAACC CTCCTGCATA AGTTTTATGG TAAAGATGAG GCAGCCTCTC CCGGTCATAA AAAAGTAGAA ACAGTCTCCA GGGAGAAGGA AGCAGATGTC TTTCATCAAA TTACAGAGGA GGAATCCAAG CGACCAATGT CGGAGAAGGC CCTGGAGCTA TCCAGGGTGT CTGTTCCCAT GCCAGATGTC CATGGCGAAG TTTATTGTCC TATTGCTCCT GATCAGCACA TACACCTGGG AGAGCCAGCT TCAGAGTCCG GTTATTACCG AGAGAAGAAT TTAGTTATGT GTGATTGTGG TATCCAAGTT AATTTTGAGG ATCGTTCCTT TGAGTCTAAT ACCCATGTTA CTCTCTGTCA TAAGTGCAAG TATTCTTCAC ACCATAATGC TTCTAATGGT GGTGGTATTC AAGTTAATAC TCTAGAAGAT GGAACTGCTC AAGCTTCCCC GGTTTCTATA ATTCCCTGCG AAGATGAAAA TTTCCGAGGG GATGCAATTT CATTACCTAA TTCTAGGAAG CTATCCACCT TGCAACGCCC AGAGCGTATT GCTAAAAAGC GCAAGCTTGG AAACATGGTG TATGAAGGAG ACATGAAATG GGAGAATGAG CAAGGCTTTC TTGATTGTCA AAGTGACAAG TCCTTTAAGG GAAGCGACAA GTGTGATTTT GTTCCATCTA TTTCCAAGGA CATTGAAATT GGTAGAGCAG CTGCGGTGAC AGCTGGACTT AAAGCCCAGT CGGTAAGTCC AATTGAGAAG ATTATACTTA AAGAGGTGTT GAAGCGCAAA GGTAGCCATC AGGAGTACCT AGTTTGCAGG AATTCTATCT TAGGCCTGTG GAGTAAAAAT GTCAGCCGAA TCTTACCTGT CACTGAGTGT GGTGTTACCG GTGGCCCTTC TGAGAATGAA TTGCCTTCAG CTTCCCTTAT CAGAGAAGTC TATAAGTTTC TTGATCAGAG AGGTTATATA AATGCTGGAA TTTCATCTGT GAAGGGGAAG GCGGGATCTT TGACTAATCA AGACTATGAT CTCCTCCAGG GGAGAAAGCT TGAAGAAAGT TCTATGGCTT CTGTTGCAGA TTCTGAAGAG GGAGTTGCTT TTATCCTTGG TCAGGTCAAA GCCGTTGAAT CAACTAGTGA GGGTAAGAAA TGTGCTTTCC AAAATGATGA AAGGGACTTG GTAGGATGTG CGACCTCGGA AATGTTGGAA TCTACCAGCA AAACATGTGA AGCAAGCATT ATTGATGATT GCAAACATTC TGTGAGCATA AATGCTTTAC AGGATGGTAC TGCATCTAAT GTTGAAAAGC ATCCTGAAAC TTTTTCAGTA GCTAAGCCTG CTTTGTCTAG CACACTCTCC TCTGCAAATA GTAATCAAAT GAAAGGAAGG GACTGTGTTC CATGTGAGGT TAAAGATGAG AAGAAAGTTA TAGTTATTGG AGCTGGTCCT GCGGGATTAA CTGCAGCACG TCATTTACAG CGCCAGGGTT TTTCGGTAAC CGTTCTTGAG GCAAGGAGTA GAGTAGGTGG TCGTGTATTT ACAGACCGTT CGTCTCTTTC AGTTCCTGTG GATCTTGGGG CTAGCATAAT TACTGGCATT GAGGCTGATG TGCCATCTGA AAGAATGCCA GATCCTTCGG TATTGGTCTG TAACCAATTA GGTCTGGAGT TGAGCGTGTT GCATGGATTC TGTCCTCTTT ATGATACTGT AACAGGGAAA AAGGTTCCTG CAGAATTAGA TGATGCTCTA CAAGCAGAGT TCAACAGTCT AATTGACGAT GTGGATTTGC TTGTTGAGGA AATAGGCAAG GAAAGAGCAA ATAAAATGTC TCTTGAGGAT GGTTTAGAAT ATGGCCTTCA ACGGTTGAGA ATGCCACATG ACAAGGTGAA CATTGACAAA ATTGGGCTTG CCAATTCAAG CTCAAAAACA GGCATCAGTG GTCCCTTTAC GCAAGATGAA AGCTGGAAAG ATGATTTTTT GAATCCTTTG GAGCGAAGAG TTATGAATTG GCATTTTGCT CACACAGAAT ATGGTTGCGC TGCTGTCCTC AAGGAAGTTT CGCTTCCTCA CTGGAATCAA GATGAGTTTT ATGGCGGGTT TGGAGGGCCA CATGCTATGA TTAAAGGTGG TTATAGCCGA GTTGTTGAGT CGCTTGCAGA AGGACTTGAC ATTCACTTAA ACAAAATAGT TTCTGAGGTA TCTTATACCT CTGATGTATC TGCCATGCAT AACAGCAAGC ATAAAGTCAG AGTTAGTACA TCAAATGGCT GTGAGTATCT TGGAGATGCT GTTCTGGTAA CTGTTCCTCT TGGATGCTTG AAAGCAGAAA CTATTAAGTT TTCACCACCC TTGCCGGACT GGAAATATGC GTCAATCAAA CAACTTGGTT TTGGAGTTCT AAATAAAGTT GTGTTGGAGT TCCCAGAGGT ATTTTGGGAT GATAGTGTTG ATTATTTTGG GGCAACTGCT GAGGAAACAG ATCTAAGAGG TGAGTGCTTT ATGTTTTGGA ATGTCAAAAA AACTGTTGGT GCTCCTGTCC TGATAGCTTT GGTGGTTGGG AAGGCTGCTT TTGAATATAC AAACAAGAGT ACGTCTGAGC ACGTGAACCA TGCAATGATG GTTCTTCGGA AGCTTTTTGG TGGGGATCTG GTTCCTGATC CTGTTGCCTC GGTAGTTACT GACTGGGGCA CTGATCCTTA CAGTTATGGT GCCTACTCAT ATGTTGCTAT TGGTGCTTCT GGTGAAGATT ATGACGTATT GGGAAGGCCT GTTCAGAATT GTTTGTTTTT TGCTGGTGAG GCAACATGCA AAGAGCATCC TGACACTGTT GGTGGTGCAA TGATGACTGG AGTCCGAGAA GCTGTGCGTA TAATTGATAT ACTTAGAAGT GGAAATGATT ACACAGCCGA AATAGAAACA CTAGAAAAAG CGCAGAGGAA ATCTGTACCT GTGAGGGATG AAGTCAGAGA CCTAATAAAG AGGCTGGAAG TTGTTGAGCT GTCTAATGTG CTAGCCAGGC AATCATTGCT ACGGAACATG TTCTTTTCTG CTAAAACAAC TGTCGGGCGT TTGCATTTAG CCAAGGAGTT GCTTAACCTA CCTGGTGAAA CCTTGAAATC CTTTGCAGGC ACAAAAGAAG GGCTTGCAGT GCTGAACTCT TGGATCCTGG ATTCGATGGG GAAGAATGGA ACCCAGCTTT TACGTCACTG TGTACATATT CTTGTTCGAG TTACGAGTGA TCTCTTTGCC GTGAGGCTCT CAGGCATTGG GAAGACTGTG AAAGAAAAGG TTTGTGCACA CACAAGCCGT GATATCCGTG CCATTGCAAG TCAGCTTGTT AATGTGTGGC TGGAACTATA CCGGAAAGAA AAAGTAAATA GTGGAAAGAA ATCATTGAGA CAAGCGAATA CAACAAACAC CTCTAGAATA AGAAGAAAAC TGAATAGTCC GGACACAGAC AGTAAGGGAA AGCTGAGCAA TGGCAACGAT GTGAAAACAG ATGAAGAGCT TGAGGACAAC CAGCTACCTA TGTCAGAGGA AGAGAAGGCT GTGTTTGCTG AAGCTGAGGC GGCTCGTGCA GCAGCAGAAG CAGCTGCAAA GGCATTTTCT GAGGCCTATC ATAATACTTC ATTGCAGCTT CCTAAGATTC CCTCGTTTCA TAAGTTTGCC AGGCGAGAGC AGTATGCAAA GATGGACGAA TCTGATTTCA GGAAAAAGTT TCCTGGCAAT GTCTTAGGAA GACAAGATTG TATGTCAGAG ATAGACTCGA GGAACTGCAA AGTTCGGGAC TGGTATGATT TTCCTGCCTC CTGCCTTGAC CTTGACAATT CAAGGATTCC AGTTGATAAC TATTCACAGC GTAGCCATTC AAATGAGCTT GTATCTCATT CGAAGTTCAG AGAATGTTCT GGAGAAAGTG TGGCTGCGGA TACCAGTTTC TTAACTGGGG CATGGGTTGA TACTGGTGGT AGTAGCGATG GTTTCAAGGA TTCTCAGGCT ATAGATAGAT GGCAATCTCA AGCTGCTGCT GCTGATCCTG AATTTTTCAA TCGTACTTTG CATATTAAGG ATGAAGAAGA TTCGATTGCT TGTTCGACAG GCCCTCCTAG TTGGAAGCAT GACCAACGAG CGAATGAATG TTCTGTGTCA CAGGTTACAG TGAATAAAGA GCCACATAAA AATCATAACC GAAGTGCAGA TCGTTTGAAA CAGGGGGTTG TAGATTTTGT TGCATCGTTG CTTATGGCCC CGTATAGAGC AAAAAAAATT GACAGAGATG TATACAAGTC AATTATGAAG AAGACAGCAA CAAAGGTTAT GCAACATACA ACAGATGTGG AGAAAGCTAT GGCTGTTACA CAGTTCCTCG ACTCAAAGCG GAAAAACAAG ATTCGTGACT TTGTGGACAA ACAAGTTGAC AAGTACATGG CGATAGCTCA AGTTCCAAAA CCTTGATGGT CATTGGGATC TATAGTAACG GCCAATGGTT GTTGAGTTGG TATCTGCTGG GATGGCAATG CTCCTTTGTA GAAACCACAT ATCAGGAAGC TTATGAAGCA GACGGTCTGA TGTAGAAGAG ACTTTTCCCA TGATTTTACA TACCAAAGCA TTGGCAGAGA CAAGTTTTTG GCATTACCAG ATATGATGGA GAATTTGGTC TTGCTATATT GCTAGGTATG GGTGAAGCAT CTTCTCTCCT CTTCCTGGGG GGCAATGTTC TGAGGACTTT CTGATCAAGA TTTTATGTCA AGTGGATGTG TCTTTCATCA GTTATCCCCT CGGATGATGC ATGTTCTCAA CTTACGCTGA TTTGTTTTAG TAATTGTATA GAGCTTAAGA TTTAGTGTTA ACCCCCATTA GACAAAATTC TACTTTCAGG TATCTTAATT CATTTCTTGA GATTCATGTC ATTTCTGGAA CCCAAGAGAA AAA 
Length5373
Protein Sequence
Protein Residue
Map Locationscaffold_7: 11381590.. 11388354
Download Sequence
A.thaliana
AGI-codeAT4G16310.1
DescriptionLSD1-like 3
TAIR curator summary
Alias[LDL3][LSD1-like 3]
Gene coexpression
MR
MR Locus Description
4.24264 Ahg490142 glucan synthase-like 1
6.48074 Ahg482523 ARM repeat superfamily protein
7.14143 Ahg487067 ubiquitin-protein ligase 4
10.583 Ahg481833 pumilio 3
13.2665 Ahg493040 Cytochrome b561/ferric reductase transmembrane protein family
16.4317 Ahg940928
17.4929 Ahg950187 DNA topoisomerase 1 beta
18.3303 Ahg480432
21.3307 Ahg890756 Pre-mRNA-processing-splicing factor
22.4499 Ahg471472 RNA-binding (RRM/RBD/RNP motifs) family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression