Detail


ID : Ahg487210

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|487210|fgenesh2_kg.6__344__AT5G04290.1
Sequence
ATGGATCGCA AGGGAAAGGG TAAACAGGTC GCCGGGGATG AATCGTCTTC CGGCGGAAAG AAAAGGAAAA ACACTGTCGA ATTCAGAGAT GAAGGTTTGA GGATTAAGAA GCGGAATAAC CCTGGGGTTC TTCAGTTCTT CGAAGAATCT GCTGAAGTTG GCTACTACGG AGGCAGCTCC GACGAAGATG ATGACGGATT AGGTTTCCTT AACGATATGG AAGACGAACC TGAGGTGGAA GAGAGTGGTA AGCCTGGCAA GGGAGAAAAG GGCAAAGCAT CCTTTGTTTT TCCTAAGGAA GAAGATATTA ACGAGGAAGA ATTTGATAGA ATGATGGAAG AAAGATACAA GCCAGGTTCT GGTTTTCTTC GATATGCTGA TGATGATGTG AAAGATGCCA TTGAGATGGA TGCTCTTGCT CCATCTTCCA AGGATCCTCC TATATGGAAA GTCAAGTGTG CGATTGGACG GGAGAGGCGA TCCGCTTTCT GTCTCATGCA CAAATTTGTT GAGCTGAAAA AGATAGGCAC CAAATTGCAG ATCATATCTG TTTTTTCTTT GGACCATGTC AAGGGTTTCA TTTTCATAGA AGCGGACAAG GAACATGATG TTCTTGAGGC CTGCAAGAGT TTAACTGGTA TATACGCTAC TCGGATGGTG TTACTTCCTA AAGCCGAAAC TCCAAATCTG CTAACTGTCC AAAGAAAAAC TAAAAAAGTT TCTGAGGGAA CATGGGCTCG TGTTAAGAAT GGCAAATACA AAGGAGATCT TGCTCAGATT GTGGCTGTGA GTGACACTAA GAGTAAAGCA TTAATAAAGT TAATTCCGAG GATCGATATT CAGGCCTTGA CCCAAAAATA TGGTGGGGGA GTTACTGTCC AAAAAGGCCA GTCTCCAGCT CCAAGATTGA TCAGTTCAAG CGAGCTCGAG GAGTTCAGAC CTCTCATTCA AGTGAGGCGA GATCGTGATA CTGGAATAAC TTTTGAGCAT CTTGATAGCA TGATGCTGAA AGATGGGTAT CTCTATAAGA AAGTTTCCTT AGATTCAATA TCTTCCTGGG GGGTTATACC ATCGAAGGAG GAGATACTAA AATTTACGCC TGTAGACCGA AAAGAAACTG GTGATGTAGA GTGGATCTCA GAAATTTATG GTGAAGAAAG GAAGAAAAAG ATTCTTCCAA CCGGCAGAGG GGGTGGGAAA GGAGAAGGAT CAGGGGGTGG AAAAGGAGAA GGTTCATCAG AATTTAAGTC AGAAAGTAGC TATGAGTTAT ATAATCTAGT TTGTTTCAGT CGAAAAGACT TCGGTCTGAT TGTGGGCGTG GATGACAAAG GTGACGGTTA CAAGGTTCTG AAAGAAGGTT TAGATGGACC TGTTGTAGTC ACTGTTGGAA AAAAGGAAAT GCATAATGGA CCTTTTGATT CAAAATTTAC TGCCTTGGAT CTGAATAACA AACAAATATC AATTAATGAT GTTGGTAAAC AAGGAGTTGT AAGGCAAGTA TACAGAGGGA TCATATTTAT TTATGATGAG AGCGAGGAAG AAAATGGTGG ATATTTCTGC TGCAAATCAC ACTCATGTGA GAAAGTTAAA CTCTTTACTG AAGACTCCAA TGAGAAGACT GGTGGATTTG ATGCTTCAGC TTTTGGAGAT TCTGTATCCT CCCCAAAATC GCCGCTATCT CCTGAAAAAG AGTGGCAGCC CAGGGAAAGA TACAATAATT CCAACCAAGG AGACAGAGGT AGCACGTATT CTATAGGCCA AAAGCTGAGG ATACGGGTGG GTCCATTGAA GGGGTATCTC TGCCGTGTAA TAGCTTTACG CTATTCTGAT GTTACAGTCA AGCTTGATTC CCAGCATAAA GTTTTCACAG TTAAAAGTGA GCATCTAGTT GAGGTTCGCG ACAGAAACAC TGCGCTAAGT ACAAGTGGGG ATGCGGGCAT GGGTTCCTTT CAACCTTTTG ACATGCTTGG AACAGAAAGC AGCACTGGAG ACTGGGCGAA AGGAGCAGGC ACGTCAGGTG AGGGTGGTAA CTGGAATATA GGAGGCCCTT CTACTGATTC GGGTGATAAG CTTTCTTCAA CTGATCTTTG TGTTGCTTCC TTCTGCGGTT TGGTTTTGTT TTTTTTTGCT GGCAGGAGAG TCTCAATGTT GAATGTATCA TGGTTTAACT GTACCGTGAG AACTGAGAAG AACCCATGGG GCAGTAAGCC TACGTCTGAC GTCTGGCCGA CAGTTGCAGA TGATAATACT TCAACATGGG CCAATGCAGC AGCTGAGAAC AAACCTGCCT CGGCTAGTGA TCAACCTGGT GGTTGGGATT CCTGGGTTAA AACACCTGCT TCTGAAGCTG GCACTGTTAG TGGGTGGGGA GATACAAGTG CTTCAAATGT TGAAGCTTCT TCGTGGGGAA AACAAGGAGC TTCTACTTCC AATGTTGCAG ATTCAGGTTC CTGGGGTATG CATGGTGGAA GCTCTGGTGG TAATAAGCAA GATGAGGACT CAGTATGGGG TAAACTATGT GAAGCTTCTG AATCGAGTCA GAAGAAAGAA GAATCGTCTT GGGGTAAGAA AGGGGGATCT GAATCTGGTT TGGGAACGGG AGATGGAGAA TCTAGTTGGG CCAACAAAGA TGGAAATTCC AGCGCAAGTA ACAAAGATGG AGTTTCCTGG GGACAACAGG AGAAAGGCTC TGATGGGAGC AAGGGAGGAT CTGCATGGGG TAATCAAGGT GGAGGTTTTG GTTCAGGAGA GAAAAAAGAT GGTTCTTCTG GTTGGAACAA GTCAGCAGAA GATTCCAATG CCAATAGTAA GGGTGTTCCT GGCTGGGGTA AGCCAGATGG TGGCTCTTCA TGGGGTAAAC AGGATAAGCA AGACGGAGTG GCATCGTGGG GTAAAAAGGA TGACGGAGGC TCGTGGGGTA ATAAGGATGA CGGAGTATCA TCGTGGGGTA AGAAAGATGA CGGTCAAAAG GATGATGGAG GATCATCGTG GGGTAAGAAG GACGATGGAG GATCTTCTTG GGGCAAAAAG GACGATGGAG GATCTTCTTG GGGCAAAAAG GACGATGGGG GATCGTTGTG GGGTAAAAAG GATGATGGAG GATCTTCTTG GGGCAAAAAG GATGATGGAG GATCATCGTG GGGTAAGAAG GATGAGGGAG GGTACTCAGA ACAAACATTT GATAGGGGAG GACGTGGGTT TGGTGGGAGA AGAGGAGGAG GTCGTCGAGG TGGCAGGGAT CAGTTTGGGA GGGGAAGCTC CTTCAGTAAT TCTGAGGATC CGGCTCCATG GAATAAACCA AGTGGCGGAT CTAGCTGGGG CAAGCAAGAT AGTGATGGGG GCGGTTCAAG CTGGGGTAAA GAGAATGATA CTGGTGGTGG ATCTGGCTGG GGAAAGCAAG ACAGTGGTGG TGGTGGTTCA AGCTGGGGTA AACAGAACGA TGCTAGTGGT GGTGGATCGA GCTGGGGCAA GCAGAATAAT GCTGGTGGCG GATCTAGCTG GGGCAAGCAA GACACTGGTG GGGATGGTTC GAGCTGGGGT AAACAGGATG GTGGTGGTAG TAGTGGTTCT GGTTGGGGTA AGCAGAACAA TGCTAGTGGT GGATCAAGCT GGGGCAAGCA GAGTGATGCT GGTGGGGGAT CTAGCTGGGA CAAGCAAGAC GGTGGTGGGG GTGGTTCAAG CTGGGGCAAA CAAGATGGTG GTGGTGGCAG TGGTTCTGCC TGGGGTAAGC AGAACGATAC TAGTGGTGGA TCATCGAGCT GGGGGAAGCA GAATGACTCT GGTGGAGGAT CTAGTTGGGG AAAGCAAGAT GGTGGTGGGG GTGGTTCAAG CTGGGGTAAA CCGGATAACG ATGGTGGTGG TGGTGGATCG AGTTGGGGCA AGCAGGGTGA TGGTGGTTCT AAACCTTGGA ATGAACAGAG TGGTGGTGGT CGTGGGTTTG GTGGAAGTAG GGGAGGAGGG GGATTCCGAG GAGGTTTCCG TGGAGGCAGA AACCAATCAG GTAGAGGAGG AAGGTCGTTT GATGGTGATC AATCATCTAG CTGGAAAACA GACAATCAAG AAAACACTTG GAAGAGCGAC CAAAGTGGTG GATCAGACTG GAAAAAAGGG TGGGGAGAGG ATTCAAACAA TAGCAAACCA TCTGGTTCGT CCTCTGGTGG TGGTGCTGGA AACTGGCCTA GCTGGGATAC TAACTCAAAA AGAGAAACCA ATGATAAACC GGGAGACGAA AGCAAATCAG CTTGTTGGGG GACCAGTAAC GATCAGGCGA ATACCGATAT CAACAATGAC ACTTGGAACA AAAAGCCAAA CAATGATGTC GGAACGAGTG GAGAAGCTGA TAATGCATGG GGCGGCAACA CAAATGCAGA AGTGCCTTCA CCAAGTGGCT CGGCAGCGTG GGGAACCGGT GACAAAAAAA CTGGATGGTA A
Length4431
Protein Sequence
Protein Residue
Map Locationscaffold_6: 1355626.. 1362084
Download Sequence
A.thaliana
AGI-codeAT5G04290.1
Descriptionkow domain-containing transcription factor 1
TAIR curator summaryEncodes SPT5-Like, a member of the nuclear SPT5 (Suppressor of Ty insertion 5) RNA polymerase (RNAP) elongation factor family that is characterized by the presence of a carboxy-terminal extension with more than 40 WG/GW motifs. Interacts with AGO4. Required for RNA-directed DNA methylation.
Alias[KTF1][SPT5L][kow domain-containing transcription factor 1][SPT5-LIKE]
Gene coexpression
MR
MR Locus Description
2.44949 Ahg350108
6 Ahg937974 DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding
6.7082 Ahg936236
8.48528 Ahg482091 ARM repeat superfamily protein
8.83176 Ahg476560 glycine-rich RNA-binding protein 5
9.69536 Ahg489951 RNA-dependent RNA polymerase 2
11.4018 Ahg472501 Phosphoinositide phosphatase family protein
12.6491 Ahg487814 26S proteasome regulatory subunit, putative (RPN5)
13.4907 Ahg932741
16.4317 Ahg480309 ARM repeat superfamily protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression