| Annotation |
|---|
| Description | jgi|Araly1|489951|fgenesh2_kg.6__3085__AT4G11130.1 |
| Sequence |
ATGGTGTCAG AGACGACGAC GAACCGATCA ACACTCAAAA TCTCCAACGT TCCTCAAACC ATAGTCGCTG ACGAACTCCT CCGGTTCCTA GAGCTCAACC TCGGCGAAGA CACCGTATTC GCCCTCGAAA TCCTAACAAC TCGGGACAAT TGGAAGCCAA GAGACTTCGC TCGAGTACAA TTCACTACCC TCGAAGTCAA ATCTCGTGCC CAGCTTCTCT CTTCTCAAAG CAAGCTCCTT TTCAAAACCC ATAACCTAAG ACTCTCTGAA GCTTACGACG ATATCATCCC TCGTCCTGTA GATCCAAGGA GAAGACTAGA CGACATCGTT TTGACTGTTG GGTTTCCTGA GTCTGACGAG AAGAGGTTTT GTGCCCTAGA AAAATGGGAT GGTGTGAGGT GTTGGATTTT GGAAGAGAAG AGAAGACTTG AGTTTTGGGT TTGGGACAAT GGTGAATGTT ATAAGATTGA AGTTAGGTTT GAGGATATTG TTGAAACTCT TTGTTGTTGT GTTAATGGTG ATGCTTCTGA GATTAATGCA TTTCTTCTCA AGCTGAAATA TGGACCGAAG GTATTTAAAA GAGTATCAGG ACCTCATATA GCCACAAAGT TTAAGTCTGA TCGGTACCGA TTCTGCAAGG AGGATTTTGA TTTCATGTGG ATTCGGACAA CTGATTTCTC TGATTTGAAA TCAATTGGTA TATCAACTTG CTTTTGTTTG GAAGTCCACA ACGGCTCAAC GATGTTGGAC GTTTTCTCGG GCTTACCTTA CTACAGAGAA GAAACTTTGA GTCTAACTTT TGTGGATGGG AAGAACTTTG CCTCTGTATC TCAAATTGTT CCCCTCTTGA ATGCCGCCAT TCTGGGGTTA GAGTTTCCAT ATGAGATCCT TTTCCAACTC AATGCGCTTG TTCACGCACA GAAAATCAGT CTTTTTGCTG CGTCAAATAT GGAACTGATC AACATTTTTC GTGGTTTGAG CTTGGAAACC ACTTTGGTGA TCCTCAAGAA ACTTCACCAG CAAAGCTCTA TATGTTATGA TCCTCTCTTC TTTGTCAAGA CTCAGATGCA ATCTGTGGTT AAGAAGATGA AGCATTCCCC TGCATCAGCT TATAAAAGAT TAACCGAGCA GAACATCATG AGTTGTCAGA GAGCCTACGT TACACCCTCA AAGATTTATC TGTTGGGTCC AGAGCTTGAG ACTGCCAATT ATGTTGTGAA GAACTTTGCA GAGCATGTCT CAGATTTCAT GAGAGTTACT TTTGTTGAAG AAGATTGGAG CAAGCTTCCT GCAAATGCTC TTTCTGTGAA CTCCAAGGAA GGCTATTTTG TGAAGCCCTT TAGAACCAAC ATTTATAACA GGGTGTTGTC AATCCTTGGA GAAGGGATCA CCGTTGGGCA TAAGAGGTTT GAGTTCTTGG CTTTTTCAGC CAGCCAACTG CGAGGAAATT CGGTCTGGAT GTTTGCTTCT AACGAGAAAA TAAAAGCTGA AGATATAAGA GAATGGATGG GTTGTTTCCG TAAAATCCGA AGCATTTCTA AATGTGCTGC TAGGATGGGT CAGTTGTTCA GTGCTTCGCG GCAGACACTT AATGTCCGTG CACAAGATGT GGAGCAGATT CCCGACATCG AAGTGACTAC TGATGGTGCT GATTACTGCT TCTCGGATGG CATCGGGAAA ATTTCACTGG CATTTGCTAA GCAAGTTGCA CAGAAGTGTG GATTGAGTCA TGTCCCTTCT GCATTTCAAA TTCGATATGG TGGCTACAAA GGTGTGATTG CCGTTGACCG CAGTTCCTTC AGAAAGATGT CTCTGCGTGA TAGTATGCTT AAATTTGACT CGAACAACAG GATGCTTAAC GTTACCAGGT GGACAGAGTC GATGCCTTGC TTCTTAAACC GGGAGATCAT TTGCCTTTTG TCGACGCTTG GAATAGAAGA TGCAGTGTTT GAGGCGATGC AATCGGTGCA TTTATCTATG CTGGGGAATA TGCTTGAAGA CCGCGATGCA GCACTAAATG TTCTGCAAAA ATTGAGCGGA GAAAATTCCA AGAATCTGCT AGTTAAGATG CTGCTTCAAG GATATGCACC AAGTTCGGAA CCTTACCTCT CAATGATGCT TCGTGTGCAC CACGAGAGCC AGCTTTCTGA ACTAAAGAGC AGGTGCAGGA TACTTGTACC GAAAGGACGA ATCTTGATCG GTTGCATGGA TGAAATGGGT ATCCTGGAAT ATGGCCAAGT GTTTGTTCGT GTAACCCTGA CTAAAGCGGA ACTTAAATCT CGCGAACAGA GCTACTTCCA CAAGATTGAT GAGGAAACAT CTGTGGTGAT TGGGAAAGTG GTCGTCACGA AAAACCCATG TCTTCACCCT GGAGATATCA GAGTTCTTGA CGCAATATAT GAGGTCAATT TCGAAGAAAA GGGATTTCTT GACTGCATCA TCTTTCCTCA GAAGGGAGAA AGGCCACATC CAAATGAATG TTCTGGTGGT GATCTCGACG GAGACCAGTT TTTTGTTAGT TGGGATGAGA AGCTTATACC AAGCCAAATG GACCCTCCAA TGGACTACGC TGGAAGCAGA CCTCGTATAA TGGACCATGA CGTCACCTTA GAGGAAATCC ACAAATTTTT TGTGGATTAT ATGATAAGCG ACACGCTTGG GGTGATCTCA ACTGCACATT TGGTTCACGC AGACCGTGAT CCAGAAAAAG CCCGGAGTCA GAAGTGTCTA GAGTTAGCAA ATCTTCACTC TAGGGCTGTT GATTTTGCGA AAACTGGAGC TCCAGCTGAG ATGCCTTATG CCTTAAAGCC CAGAGAGTTC CCTGATTTCC TGGAACGGTT TGAGAAACCA ACATACATCT CTGAGTCTGT GTTTGGAAAA CTCTACCGTG CTGTGAAAAG CTCGTTAGCA CAGAGAAAGC CAGAAGCTGA GAGCGATGGC ACGCTAACTT ATGATGCGAC ACTTGAAGAA ACTGGCTTTG AGAGCTTTAT AGAGACAGCG AAAGCCCATA GAGACATGTA TGCTGAGAAA TTGACCTCAT TAATGATATA CTACGGAGCT GTCAACGAAG AGGAGATTCT CACAGGCATT TTGAAAACCA AGGAGATGTA TCTGGCGAGA GATAACCGGA GGTATGGTGA TATGAAGGAT AGAATTACGC TGTCCGTGAA AGATTTGCAT AAAGAGGCCA TGGGATGGTT CGAGAAAAGC TGCGAGGACG AACAACAGAA GAAGAAGCTA GCATCGGCGT GGTACTATGT AACATACAAC CCGAGCCATC GCGATGAGAA GTTGACATTC TTGAGTTTCC CATGGATCGT AGGTGACGTT TTACTTGATA TAAAAGCTGA AAATGCACAG AGACAGAGCA TTGAAGAGCC AACAAGTGGA CTTGTATCCA TTTGAATTAC CCTATCTAAC ACTTGGTGTA GTATAATTGC TAGCTAAAG |
| Length | 3449 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 19600793.. 19604728 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G11130.1 |
| Description | RNA-dependent RNA polymerase 2 |
| TAIR curator summary | Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). |
| Alias | [RDR2][SMD1][RNA-dependent RNA polymerase 2][SILENCING MOVEMENT DEFICIENT 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 9.69536 |
Ahg487210 | kow domain-containing transcription factor 1 |
| 15.8114 |
Ahg927562 | Major facilitator superfamily protein |
| 21.2838 |
Ahg927143 | Pentatricopeptide repeat (PPR) superfamily protein |
| 21.7256 |
Ahg475254 | Clathrin adaptor complexes medium subunit family protein |
| 25.3969 |
Ahg950867 | U5 small nuclear ribonucleoprotein helicase |
| 26.6083 |
Ahg470079 | armadillo repeat kinesin 2 |
| 35.1994 |
Ahg937129 | metalloendopeptidases;zinc ion binding;DNA binding |
| 35.6651 |
Ahg474017 | associated molecule with the SH3 domain of STAM 1 |
| 51.4781 |
Ahg485786 | glyoxal oxidase-related protein |
| 57.3498 |
Ahg494600 | SET-domain containing protein lysine methyltransferase family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|