| Annotation |
|---|
| Description | jgi|Araly1|950867|scaffold_802754.1 |
| Sequence |
AAAAAAAAAA CGAATAATTT AATCATGGTC CACATGTTGT TATCGACGCC GTTTAACGCC AGCGATCGCC TTCTTCCTCG GAGAGCCGAA ACCACAGAGA AGAAGAATCT TAAACGACGC AAGTACAGTG TTTTTGTCAT GTTAGCTCAG CTTCCTCGCT TGACAAGCTC TCTTAGAGAG CCTTTCGACA TCGATCAGGC TTACCTTCGC CGCAAAACTA TACTCCAAAC TCTTAATAAG CCTCGCAGCT CCGGGAATCG CCTTGATGAA TCCGACCTTG CTAAGAGGAT AGTTCATCAA TGGGAAGGAG CTTCTCCAGA AGTGCGACAA GCATACAAGC AGTTTATTGG AGCTGTAGTG GAGTTAATTG ATCGGGAAGT TCCATCAGAT GAGTTTCGTG AGGTTGCTTT TTCCACTTAT CATCTGTTTG GCAAGCCAGT GGAGGAGGAC AGTGATATCA ATGATAATAA AAGCATTGCC GAAAACAAGT TAGAGTTGCA AAATCTTGTT GGGCATGCTG TCTCAGATGC TAATGTAAAG AACGTGGCCT CCTTAGCTCA GGCACTTTAC TCAATACAGC CTACTCATCA GTCTGAGACA TATGTTAATG AAGTTAATGG GGGAGCTGAG TTTGGTGCCG ACCTTGTTTT CAATCTACCA GCTCGTTTTT TGGTAGAAGC ATCTCTTGAC GAAAAAGGAT TTCTGGATGT GGAAAGCAAT GATGCTCATG CATCCTTTTC TGAAGGATGG AGTGATGTTA TCGACACGAA AAATAATCAC AGTGCAGGAA AATTCAATTT AAGTTGGCTA AGAGATGCAT GTGGTCAGAT GGTTAGAGAA ACCAATTCAC AACTTTCCCG TGAAGAACTG GCTATGGCTA TATGCAGATT TTTGGATTCA GATAAACCCG GTGAGGAGAT AGCTGGGGAT CTGCTGGATC TTGTTGGGGA TGGTGCATTT GAGACTGTTC AAGACCTTAT TATGCATCGG AAGGAAATTG TTGATGCTAT CCATCATGGT CAAATGATTC TCAAGTCTGA CAAAACAGCT TCAAACACCC AATCTCGGAT GCCTACCTAT GGTACACAGG TTACTGTTCA AACAGAGTCT GCAAAGCAAA TTGAAAAACT TCGGCGCAAG GAGGAAAAGA AAAATAAACG AAATGCCGAT CTTGGTTTAG AGAGTGAAAT ATCAGAGGCC AATTTTTCTT CTTTACTTGA GGCAAGTGAA AAGAAGACTG CATTTGAGGA TCTGATCGGG TCTGGAGAAG CGAATTCTCT GGCACTGGCC CTTCCCCAAG GTACTGTAAG GAAGCACTTA AAAGGATATG AGGAAGTGTT TATCCCGCCA ACCCCTACTG CACAAATGAA ACCTGGCGAG AAGCTGATTG AGATAAAAGA GTTAGATGAC TTTGCTCAAG CTGCTTTTCA TGGTTACAAG TCTTTAAACC GTATTCAGAG TCGCATATTT CAGACAGTTT ACCACACCAA TGAGAATATA TTGGTCTGTG CTCCAACAGG AGCTGGTAAA ACAAATATAG CTATGATTTC TGTTCTACAT GAGATCAAAC AACATTTCAG GGATGGCTAC TTGCACAAAA ACGAGTTTAA GATTGTTTAT GTAGCTCCTA TGAAGGCGTT AGCAGCAGAG GTCACGTCAG CATTTAGCCG TCGTCTAGCT CCATTAAATA TGGTTGTTAA AGAGCTTACA GGGGATATGC AACTCACGAA GAGTGAACTT GAAGAAACTC AGATGATAGT GACAACACCA GAGAAATGGG ATGTCATTAC TCGCAAAAGC AGTGACATGT CATTATCAAT GCTAGTAAAA CTATTGATCA TTGATGAAGT GCATCTTCTG AATGATGATA GAGGTGCAGT GATAGAGGCG CTAGTTGCTC GGACCCTCCG TCAGGTGGAG TCAACACAGA CAATGATAAG AATTGTGGGC CTGTCAGCCA CTTTACCTAG CTACCTACAG GTTGCTCAGT TTCTACGAGT GAATCCAGAC ACTGGCCTCT TCTATTTTGA TTCAAGTTAT CGCCCAGTTC CCTTAGCTCA ACAGTACATA GGCATCACTG AGCATAACTT TGCTGCTAGA AACGAATTGT TAAATGAGAT ATGCTACAAA AAGGTTGTTG ATTCAATTAA ACAAGGTCAT CAAGCAATGA TTTTTGTTCA TTCCCGAAAA GACACTTCAA AAACAGCTGA GAAACTGGTT GATCTTGCTC GGCAGTATGA AACTCTGGAT TTGTTCGCGA ATGAGACTCA TCCTCAGTGT CAACTGATGA AGAAAGACGT TATGAAGTCC AGAAATAAGG ATCTTGTCAA ATTTTTTGAA GCTGGCTTCG GAATTCATCA TGCTGGGATG TTGCGATCTG ATAGAACACT TACGGAGAGG CTGTTTTCTG ATGGTCTCTT GAAGGTGCTT GTTTGCACTG CAACTCTTGC GTGGGGTGTA AATCTGCCTG CACACACAGT CGTAATTAAG GGAACTCAAT TGTATGATGC CAAGGCTGGT GGGTGGAAAG ACTTGGGAAT GCTTGATGTC ATGCAGATCT TTGGAAGGGC TGGGAGACCC CAATTTGATA AGAGTGGTGA GGGAATTATC ATCACATCCC ATGACAAGCT GGCATACTAT CTCCGGCTGC TGACGAGTCA GCTTCCCATA GAAAGTCAGT TCATAAGCTC CTTGAAAGAT AACTTAAACG CAGAAGTGGT TTTGGGAACT GTGACTAATG TAAAGGAAGC CTGTGCTTGG CTTGGATATA CATATTTGTC AATTCGGATG AAGTTGAATC CTTTGGCTTA TGGCATTGGA TGGGACGAGA TAATTGCCGA TCCTTCTTTA TCGTTGAAGC AACGAGCCCT TGTGGCTGAT GCTGCACGTT CACTGGACAA AGCTAAGATG ATGAGGTTCG ATGAGAAAAG TGGGAACTTT TACTGTACCG AGCTTGGACG GGTTGCAAGT CACTTCTATA TTCAATATTC TAGTGTTGAA ACATACAACG AGATGTTGAA GCGGCACATG AATGAAAGCG AGATAATTAA TATGGTTGCC CATTCTTCTG AATTTGAAAA TATTGTGGTA AGAGAGGAAG AGCAGCATGA ACTTGAGTCT CTTGCACGCT CTTGCTGTCC CTTAGAAGTT AAGGGAGGCC CTTCTAACAA ACATGGAAAA ATTTCGATTC TTATTCAGTT GTACATATCC CGTGGATCAA TTGATGCATT TTCTCTGGTC TCTGATGCTT CATACATTAG TGCTAGTTTA GCACGTATAA TGCGTGCTCT GTTTGAGATA TGCTTGCGAA AAGGCTGGTG TGAGATGACT TTATTTATGT TGGAATACTG CAAGGCAGTT GATCGTCAAC TATGGCCTCA TCAGCATCCT CTTCGGCAAT TCGATAGGGA TCTACCTTCT GATCGAGGGG CTGACTTAGA CCGTTTGTAT GAGATGGAGG AAAAAGACAT TGGAGCGCTG ATTCGTTATA ATCCTGGGGG AAGGCAACAT CTAGGATATT TTCCTTCAAT TCAGTTGGCA GCTACTGTTA GTCCAATCAC CCGCACTGTA TTGAAGGTGG ATGTGCTTAT AACTCCAGAT TTCATATGGA AGGATCGTTT TCATGGTGCT GCTCTTCGTT GGTGGATTCT CATTGAGGAC ACAGAGAATG ATTATATCTA CCACTCAGAT CTTTTCACAC TAACGAAACG GATGGCTAGA GGGGAACCGC AGAAGCTTTC TTTTACCGTA CCGATATTTG AACCACACCC ACCACAATAC TATGTTCATG CAGTTTCTGA TTCTTGGTTG CATGCAGAGT CTTTCTTCAC AATCTCTTTC CACAATCTTG CACTACCAGA GGCACGAACA TCTCACACAG AGCTTTTAGA CTTAAAACCT CTTCCTGTGA CTTCTCTTGG GAATAAGTTG TATGAATCGC TTTACAAATT TTCACATTTC AATCCAATAC AGACTCAGAT TTTCCATGTG TTATATCACA CAGACAACAA TGTTCTTGTA GGAGCTCCAA CTGGAAGTGG GAAAACTATA TCTGCTGAAC TTGCAATGTT GCGTCTCTTC AGTACCCAGC CTGATATGAA GGTTGTTTAC ATAGCACCAC TGAAGGCTAT TGTTCGAGAA AGGATGAATG ATTGGAAAAA GCATCTTGTT GCTCCACTTG GAAAAGAAAT GGTTGAAATG ACTGGAGATT ACACTCCAGA TTTAGTAGCT CTCTTGTCCG CAGACATTAT CATATCTACC CCTGAAAAAT GGGATGGCAT TAGTCGTAAT TGGCATACTC GAAGTTATGT CAAAAAGGTC GGCCTTGTTA TTTTGGATGA GATTCACTTG CTTGGAGCCG ACAGAGGACC CATACTTGAG GTTATTGTGT CTAGGATGAG ATATATATCA TCACAGACAG AGCGCTCGGT CCGGTTTGTT GGTCTTTCTA CAGCTTTGGC AAATGCAGGT GATTTGGCTG ACTGGTTGGG TGTTGGGGAG ATCGGACTTT TCAATTTTAA ACCAAGCGTC AGGCCTGTAC CAATTGAAGT TCATATTCAG GGTTATCCTG GGAAGTATTA CTGCCCACGG ATGAATAGCA TGAACAAGCC AGCATATGCA GCCATATGTA CCCATTCACC TACAAAACCA GTTCTTATCT TTGTTTCATC CCGTAGGCAG ACAAGGCTTA CCGCACTGGA TCTTATTCAG TTTGCTGCCT CCGACGAACA TCCGCGGCAA TTTCTAAGTG TGTCAGAGGA AGACTTGCAG ATGGTCCTCT CACAGATAAC TGACCAGAAC CTCCGACATA CGTTGCAATT CGGCATCGGA CTGCATCATG CAGGTTTAAA CGACCACGAT AGATCTGCAG TCGAAGAGCT TTTCACGAAC AACAAGATTC AGGTTTTGGT CTCAACAAGT ACCTTGGCAT GGGGAGTGAA CCTACCAGCT CACTTAGTTA TTATAAAGGG AACTGAATAT TTCGACGGGA AAACCAAAAG ATATGTTGAC TTCCCTCTTA CAGAGATCTT GCAAATGATG GGACGTGCAG GGCGTCCACA GTTTGACCAA CATGGGAAAG CGGTCATTCT TGTACATGAA CCTAAAAAAA GCTTTTACAA AAAGTTCTTG TACGAACCAT TCCCCGTAGA AAGTAGTTTG AAAGAGAAGC TGCACGATCA CTTCAACGCA GAAATAGTCT CTGGAACAAT AGGCAACAAA GAAGATGCGG TGCATTATCT TACATGGACG TATTTGTTTC GCAGACTGAT GGCTAATCCT GCTTACTATG GGCTAGAAGG TACTCAAGAC GAAACGATCT GTTCCTACTT ATCAAGATTG GTGCAAACCA CATTTGAGGA TCTTGAAGAC AGTGGATGCC TCAAAGTAAA TGAAGATAGT GTGGAGCCTA CGATGCTGGG TACAATAGCG TCACAATATT ACCTTTGCTA CATGACCGTG TCTATGTTTG GCTCTAATAT AGGTCCTGAC ACATCACTTG AAGCATTTTT GCATATCTTG GCTGGTGCTT CTGAGTATGA TGAACTTCCT GTGCGGCACA ATGAGGAAAA TTACAACAAA ACACTGTCAG ATAAAGTTCG GTATCCCGTG GATAATAACC ATCTAGATGA TCCTCATGTC AAAGCAAATC TGCTCTTCCA GGCACATTTT TCTCAGTTGG CACTCCCAAT CAGTGATTAT AACACGGATT TAAAGTCAGT ACTGGATCAA AGCATTCGGA TCCTCCAGGC CATGATTGAT ATCTGCGCAA ACAGTGGATG GCTCTCAAGC TCACTGACGT GTATGCGCCT TTTGCAAATG GTTATGCAGG GCATGTGGTC CGATCAAGAT TCGTCATTAT GGATGATCCC ATGCATGAAT GATGATCTTC TAGGATCTCT GACCGCAAGA GGAATTCACA CGCTGCATCA GCTATTAGAT CTTCCAAAGG AAACTCTACA AAGTGTAACC GGAAACTTCC CTGCATCAAG ATTATCTCAG GATCTCCAAC GCTTTCCACG GATCCAAATG AATGTGAGAC TTCAAAAGAA GGATTCGGAT GGCAAGAAAA AGCCTTCAAC GCTGGAAATC AGATTGGAAA AGACATCAAA GAGGAATAGC TCGAGGGCGT TGGCCCCTCG ATTCCCAAAG GTGAAAGACG AAGCGTGGTG GTTGGTTCTT GGTGATACTT CAACTTCTGA GCTCTTTGCT GTGAAGAGGG TTTCGTTCAC TGGTCGTCTG ATCACACGCA TGGAGTTACC TCCCAATATA ACCTCGTTTC AGGATACGAA ACTCATCTTA GTTTCGGATT GTTATTTGGG GTTTGAGCAA GAACACTCCA TTGAACAACC TGCACGTCGC GGATGATGCA AGTTTTTTAT ATA |
| Length | 6383 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 18671460.. 18684156 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G61140.2 |
| Description | U5 small nuclear ribonucleoprotein helicase |
| TAIR curator summary | Encodes a predicted protein with 30% identity with MER3/RCK. |
| Alias | |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.73205 |
Ahg490595 | Patched family protein |
| 2.23607 |
Ahg495190 | Protein of unknown function (DUF3414) |
| 3.87298 |
Ahg495232 | cleavage and polyadenylation specificity factor 160 |
| 4.58258 |
Ahg487351 | E3 ubiquitin ligase, putative |
| 4.69042 |
Ahg942039 | basic leucine zipper 9 |
| 4.89898 |
Ahg944613 | myosin, putative |
| 5.38516 |
Ahg495073 | C2 calcium/lipid-binding and GRAM domain containing protein |
| 6 |
Ahg495420 | ARM repeat superfamily protein |
| 6.32456 |
Ahg495654 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 7.2111 |
Ahg472131 | inter-alpha-trypsin inhibitor heavy chain-related |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|