Detail


ID : Ahg487366

Blast(Query):  A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|487366|fgenesh2_kg.6__500__AT5G05660.1
Sequence
ATGGCCGGAA CCGCCACCAC CGAGTTCCGG TGGAAATCAC CGCCACAGCC TCCACCACCA CAGCAACTCA TTTCCGAATC AGATTCAGAC TCCGGATCCG ATTCAGATAA TCATCAGCAC CGTCACAATG ATCTATCAAA CTCTATCTTC AAAGCTTACC TCGATTGCCA CTCATCTTCG TCTCCTTCCT CTATCGATCT CGCTAAGATC CAATCTTTTC TCGCCTCGTC TTCCTCCGGT GCTGTCTCGT GCCTCATTTG TCTCGAACGC ATTAAACGAA CCGATCCTAC ATGGTCCTGC ACTTCCTTAT GCTTCGCCGT CTTTCACCTT TTCTGCATTC AATCATGGGC TCGTCAGTGC TTAGATCTAC AAGCCGCGCG TGCAGTCACG CGACCTTCTT CAAATCCGAC AGAACCGGAA GCGGTCTGGA ACTGTCCGAA ATGTAGATCG TCGTATCAGA AAACGAAGAT TCCAAGGCGG TATCTTTGTT ATTGCGGCAA GGAAGAGGAT CCTCCGGCGG ATAATCCATG GATCTTGCCT CATTCTTGCG GCGAGGTCTG CGAGAGGCCG TTGAGCAACA ATTGTGGTCA CTGTTGCTTG CTCTTGTGTC ATCCTGGACC TTGTGCTTCT TGCCCCAAGC TAGTGAAGGC TAAATGCTTT TGTGGAGGTG TTGAAGATGT TCGTCGATGT GGACACAAGC AATTCTCTTG CGGAGACGTC TGCGAGAGAG TCCTAGATTG TGATATCCAT AACTGTAGAG AGATTTGTCA TGATGGCGAG TGTCCACCGT GCAGGGAGCG CGCGGTTTAC AAGTGCTGTT GTGGTAAAGT GAAAGAGGAG AAGGATTGCT GCGAGAGAGT CTTTAGGTGT GAGGCTTCTT GTGAGAATAT GCTTAATTGT GGCAAACATG TATGCGAGAG AGGATGTCAC TCGGGAGAAT GTGGATTGTG TCCATATCAG GGGAAAAGGA GTTGTCCCTG TGGCAAGAGA TTCTACCAAG GCTTGTCTTG TGATGTTGTG GCGCCTTTAT GTGGTGGCAC CTGTGATAAA GTTCTTGGTT GTGGCTACCA TAGATGTCCA GAGAGGTGTC ACCGCGGTCC ATGCCTTGAG ACTTGCAGGA TTGTGGTTAC TAAGTCTTGC AGATGCGGAG GAACAAAAAA ACAGGTTCCT TGCCATCAAG AGTTGGCGTG TGAGAGGAAA TGCCAGAGAG TGAGAGATTG TGCACGTCAT GCTTGTAGAC GCCGGTGTTG TGATGGTGAA TGTCCACCAT GCTCAGAGAT TTGTGGAAAA AAGCTCCGTT GCAGAAACCA TAAATGCCAA TCTCCTTGTC ACCAAGGTCC ATGTGCTCCT TGTCCAATAA TGGTAACAAT ATCATGTGCT TGTGGTGAGA CACATTTTGA GGTACCCTGT GGCACTGAAA CAAATCAGAA ACCTCCTCGA TGCCGTAAGT TATGTCATGT AACCCCATTG TGCAGGCATG GGCAAAACCA AAAGCCTCAT AAATGCCACT ATGGTGCTTG TCCTCCATGT CGACTCCTTT GTGATGAAGA ATACCCATGT GGGCACAAGT GCAAACTAAG GTGTCATGGA CCTAGACCTC CTCCTAACCG TGAATTTATA CTTAAACCAA CTAAAAAGAT GTTGAATATT CAGGCTGAAT CTACACCGGG TTCTCCCTGC CCTCGTTGTC GAGAGCCTGT CTGGAGGCCC TGTGTAGGCC ACCACCTGGC AGCAGAGAGA ATGATGGTTT GCTCTGACAG AACTCAATTT GCATGCAATA ATTTATGTGG AAACCCTCTT CCATGTGGGA ACCATTACTG TTCGTTTATC TGTCATGCCC TGGATATAAG AAGTTCATCA TTGGATAAAA GAAGTGAGTC CTGTGAAAAG TGTGATCTCC GCTGTCAAAA GGAGAGAACA CCACGATGCC AACATCCATG TCCTCGAAGA TGCCATCCCG GAGATTGTCC ACCTTGCAAA ACTCTAGTAA AGAGATCATG TCACTGTGGC GCGATGGTGC ATGCATTCGA GTGCATATAC TACAATACAA TGTCGGAGAA GGACCAAATG AAGGTGCGCT CATGCCGTGG ACCTTGTCAC AGAAAATTGC CAAACTGTAC CCATTTGTGT CCGGAGATAT GTCATCCTGG GCAGTGTCCA TTGCCAGAGA AGTGTGGGAA AAAGGTGGTT GTTCGTTGCA AGTGCCTAAC CTTGAAGAAG GAATGGGTAT GCCAAGATGT TCAAGCAGCT CATAGGGCCA CAGGTTCTGA CCCTAAAGAA GTACCAAAGA ACCAGTTCGG TGTTGGCCTC CTCCCTTGTG ATTCCAACTG TAAGAGCAAA CTACAGATGG CTGAATCGGT GTTAAAACAG CGCAATGTCA AAGAGATTGA GGAGAAGGAG GAGCCTAGCG GGAAAAATGC ATCAAAGCGA AGGAAAAGGC GTGAACGGGG TCAGGACATT CAGGAGACCA CAAGGCTGCA GAAACTTGCT GTCATCACAA AGAGGATACT GATGGTCGTG ATGTTAATGA CAATGCTAGC TGCTGTTTCA TACTATGGTT ATAAGGGACT CTTGTGGCTT TCTGATTGGA TGAATGAAGT CGAAGAACAA AGACAAAAGT CTAGAAGATA CCCGCGAATA TAACTGGTTT TGAGAGTTTT TCCTTCTCAA GCTTTTTTAG CCTGATACTG GGCAGTGACA ACACAGTTAG CTTCGAGACA TTTGGTCTTT CTTTTTGGTT TAGTCGATGA TAATTTCATA GGGGAGATTA GAAAGATTAT CAGTTTGTTT GTTTAATTGA TTTGTGCTCT TGCTTTTAGC TTCCTTGATA TTTCGAGACA GCAAAA
Length2846
Protein Sequence
Protein Residue
Map Locationscaffold_6: 1992422.. 1997038
Download Sequence
A.thaliana
AGI-codeAT5G05660.1
Descriptionsequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors
TAIR curator summaryEncodes a homolog of the mammalian zinc finger transcription factor NF-X1.
Alias[ATNFXL2][EBI][NFXL2][Arabidopsis NF-X like 2][EARLY BIRD][NFX1-like 2]
Gene coexpression
MR
MR Locus Description
4.79583 Ahg482295 hydroxyproline-rich glycoprotein family protein
6.245 Ahg918823 Protein of unknown function (DUF3133)
9.79796 Ahg927433 SUPPRESSOR OF AUXIN RESISTANCE 3
13.0767 Ahg934753 Integral membrane Yip1 family protein
13.9642 Ahg488220
16.5831 Ahg471128 endoplasmic reticulum-type calcium-transporting ATPase 3
16.7929 Ahg495780 CwfJ-like family protein / zinc finger (CCCH-type) family protein
17.4356 Ahg474047 stomatal cytokinesis defective / SCD1 protein (SCD1)
17.5499 Ahg474271 RNA-binding KH domain-containing protein
17.5784 Ahg472163 Nucleotide-diphospho-sugar transferase family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression