Detail



ID : Ahg487696

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|487696|fgenesh2_kg.6__830__AT5G08550.1
Sequence
ATGGGAAGTA ACCGTCCTAG GAATTTCCGG CGGCGAGGGG ACGACGGCGG CGATGAAATC GACGGTAAAG TTGCTACCCC CGCGGCAAAA CCGACTTCGA CTCCTTCGTC GTCGAAACCT AAAACACCCT CAGCCTCGGC CCCGAAGAAG AAACTTCTAA GTTTCGCCGA CGACGAGGAG GAGGAAGAAG ATGGAGCTCC CCGTGTGACG ATAAAGCCTA AGAACGGCAG AGACCGTGTC AAATCCTCTT CCCGTCTCGG CGTTTCGGGA TCTTCTCACA GACACTCTTC AACCAAGGAA CATCGTCCCG CTTCTTCTAA CGTGCTTCCT CAGGCCGGTT CTTATTCGAA AGAGGCGCTG CTCGAGCTCC AGAAGAACAC ACGGACGCTT CCGTATTCTC GCCCTAGTTC AAATTCCGAG CCAAAAGTAG TGCTTAAGGG TTTAATCAAA CCTCCGCATG AGCATGAGCA GCAGAGTCTC AAGGATGTGG TCAAACAGGT TTCGGATTTG GACTTCGATG AGGAAGGGGA AAAAGAGCAG CCTGAAGATG CTTTTGCCGA TCAGGCAGCG ATTATTAGAG CCAAGAAAGA GAGGATGAGG CAGTCACGTT CAGCACCGGC GCCTGATTAC ATATCACTGG ATGGTGGTAC CGCAAATCAT TCTGCTGTTG AAGGAGTCAG CGATGAGGAT GCAGATTTTC AGGGGATTTT CGTCGGTGCG AGACCACACA AAGGTGATAA GAAAGGTGTG TTTGATTTCG GGGATGAAAA TCCTACTGCT AAAGAAACCA CGACAAGTAG TTTTTATGAG GATGAGGATG AAGAAGAGAA GTTGTGGGAA GAGGAGCAAT TTAAGAAGGG TATTGGTAAA AGAATGGATG AAGGGTCTCA TAGGACTGTA ACTAGTAATG GGATTGGCGT GCCTTTGCAT TCTAACCAGC AGTCACTACC ACACCAGCAA CCGCAGATGT ATACTTATCA TGCCGGGACA CCAATGCCGA ATATTTCTGT TGCTCCTACC ATTGGTCCAG CTACTAGTGT TGATACATTA CCAATGTCAC AACAAGCCGC ACTTGCCAAG AAGGCATTGC AAGACAATGT TAAGAAGCTT AAGGAATCTC ATGCAAAAAC GTTATCCTCC CTTACCAAGA CAGATGAGAA TTTGACTGCT TCGTTGATGA GTATCACAGC TCTTGAAAGT TCGCTATCTG CAGCTGGAGA TAAGTATGTG TTCATGCAAA AACTCAGAGA CTTCATTTCT GTTATCTGCG ACTTCATGCA GAACAAGGGT TCCTTAATTG AAGAAATTGA AGATCAGATG AAGGAACTTA ACGAAAAACA TGCTTTATCT ATTCTGGAAA GGAGAATTGC AGATAACAAT GATGAAATGT TAGAGTTGGG GGCCGCTGTG AAAGCAGCAA TGACAGTTCT AAACAAACAA GGAAGCAGTA CTTCAGTGAT TGCTGCTGCC ACAAGTGCTG CGTTGGCTGC CTCTGCTTCT ATAAGACAGC AGATGAATCA ACCAGTTAAG CTTGATGAAT TTGGCAGAGA CGAAAATCTG CAGAAGCGCA GGGAAGTGGA ACAGAGGGCT GCAGCCCGGC AGAAAAGGCG AGCTCGATTT GAAAACAAGC GTGCATCAGC CATGGAGATT GAAGGATCTT CTCTGAAAAT AGAAGGAGAA TCAAGCACTG ATGAGAGTGA CACTGAGACT TCAGCTTATA AGGAGACAAG AGATAGCTTA CTTCAGTGTG CTGATAAGGT CTTTAGTGAT GCATCTGAGG AGTACTCCCA GCTTTCAAGG GTGAAGGCGA GATTTGAGAG GTGGAAGCGA GACTATTCAT CAACTTATCG GGATGCTTAC ATGTCTTTGA CCGTTCCCTC CATCTTTTCA CCTTATGTAA GACTGGAGCT TTTGAAATGG GATCCTCTTC ATCAAGATGT GGATTTCTTT GACATGAAAT GGCATGGATT GCTATTTGAT TACGGGAAGC CAGAAGATGG GGATGATTTT GCACCAGATG ATACTGATGC CAACCTTGTC CCTGAGCTAG TAGAAAAGGT TGCGATTCCC ATTTTGCACC ATCAGATAGT TCGTTGCTGG GATATACTTA GCACCCGGGA GACAAGAAAT GCTGTTGCTG CTACAAGCTT GGTGACAAAT TATGTTTCTG CTTCGAGTGA GGCCTTAGCA GAACTATTTG CTGCTATTCG TGCTCGCCTT GTTGAAGCCA TTGCAGCTGT TAGCGTTCCG ACATGGGATC CGCTGGTATT GAAGGCTGTA CCTAATGCTC CACAAGTTGC AGCATATAGA TTTGGGACAT CAGTCCGTCT TATGAGAAAT ATATGTATGT GGAAAGACAT TCTGGCGCTC TCAGTGTTGG AGAACTTGGC TCTTAGTGAC CTTTTGTTTG GAAAAGTTCT ACCCCATGTC AGAAGCATTG CATCAAATAT CCATGATGCT GTGACAAGAA CTGAAAGAAT CGTTGCTTCT TTGTCTGGAG TATGGACAGG ACCAAGCGTC ACAAGAACCC ACAGTCGTCC ACTGCAACCT CTTGTGGATT GTACTCTGAC ACTCAGAAGA ATTCTCGAGA AAAGGCTTGC CTCAGGACTG GACGATGCAG AAACCACTGG TCTCGCCCGC AGGTTAAAGA GAATACTAGT AGAGCTCCAT GAACATGACC ATGCCAGGGA AATTGTCAGA ACATTCAATC TCAAGGAGGC CGTTTAGTGA AAATTTTATT GATGGGAAAC TGGAAAGTCA ACTCAGAAAT CTTTAGCCTC AGGTTATCAG TTACACCTTT CGGACTGTAC CAGCTAAGCC TCATCGACTT CAACATCGAA GATTACAACA TTTTCCCTAG GATTATTAGG CTAGCACCAA AAGCTTCCGG AATCCATTTT CAGACACAGA AGAGTTTTAG TACTTTGGCT TAATGTAAGT GTAACCTCTA TAGAAGCTAA AGTATCTGTA GTCTTTTTTT TTTTTTTCCT TTTATATCTG TATGAGTTTA GATTTAGCAA AGACAAAATA ATTTCTATGA ATAT 
Length3044
Protein Sequence
Protein Residue
Map Locationscaffold_6: 3414048.. 3418809
Download Sequence
A.thaliana
AGI-codeAT5G08550.1
DescriptionGC-rich sequence DNA-binding factor-like protein
TAIR curator summaryEncodes a transcriptional repressor that is homologous to the C-terminal region of mammalian GC binding factor. It regulates endoreduplication through control of CYC2A expression.
Alias[ILP1][increased level of polyploidy1-1D]
Gene coexpression
MR
MR Locus Description
4.24264 Ahg920567
5.2915 Ahg931109
6.9282 Ahg483189
8 Ahg493343 F-box/RNI-like superfamily protein
9.27362 Ahg901754 ENTH/VHS/GAT family protein
9.74679 Ahg329195 modifier of snc1
10.3923 Ahg495358 Protein of unknown function (DUF295)
12.7279 Ahg494272 casein kinase II beta chain 1
13.0767 Ahg484508 global transcription factor group E8
14.2829 Ahg488346 SIN3-like 2
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression