Detail



ID : Ahg487713

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|487713|fgenesh2_kg.6__847__AT5G08710.1
Sequence
ATTCTAGAGA CTTTCAATAA CGGGAAGACG TAGCATTCTC GCTGTCCATC AGTTTCTTCT TCCATCTTCT TGATCATCAT ATGTGATTCC ATTTACAAGT TCAATCTCTT CATGAAAAAT CCAGTCTCTT TTCAAACGGA ATCACATTTC CTTTTGATTT CTACAAGTGA AAATGTTGAC TAGAGCCATC GGACGAGTTC GAATTCCTGT GTCGAGGATT CAGGGATCGA ATAATTCGAG TGGGTTTTTG AAAGATTCGA AATTGGGTCC GATTGGTGTT TTCTGTAGAA GATGGTTATC GAACGAGAGC GGGAAACGAT TTGCGGCAAT GTGGGGAAGT GGAGATTACG GCAGATTAGG GCTCGGAAAC TTGGATTCTC AGTGGACACC TGCCGTTTGC TCTGCCTTGA GTGATCACAG TATCAGAGCT GTCGCTTGCG GTGGAGCTCA CACTCTGTTT CTCACCGAAA CGAGGAGAGT CTTTGCAACG GGTCTTAATG ATTGTGGTCA ACTTGGCGTA TCAGATGTTA AAAGTCATGC TATGGATCCG CTTGAAGTTT CTGGACTAGA AAAGGATATT CTGCACATCT CAGCTGGTTA TTATCACTCC GCTGCTATTA CAGTTGATGG AGAACTCTAC ATGTGGGGAA AGAACTCAAG TGGACAGCTT GGACTGGGAA AAAAGGCTGC AAGAGTGGTA CGTGTACCAA CTAAAGTGCA AGCTCTGCAT GGAATCACCA TACAATCCGT GGCTTTGGGT TCAGAGCATT CAGTTGCTGT TACTGATGGA GGTGAAGTCC TGAGTTGGGG AGGAGGGGGC TCTGGAAGAC TTGGCCACGG TCACCAGTCC AGTCTTTTTG GCATCTTAAG AAGTAACAGT GAGTTTACTC CAAGGCTTAT TAAGGAACTT GAGGGGATCA AGGTTAAAAA TGTTGCTGCT GGTCTGCTGC ATTCAGCATG CACTGATGAG AATGGCTCTG CTTTCATGTT CGGAGAGAGA TCTATAAACA AGATGGGCTT CGGAGGAGTA AGAAATGCCA CAACACCATC GATTATCAGT GAAGTACCCT ATGCAGAAGG AGTTGCATGT GGTGGCTACC ATACATGTGT TGTTACAAGA GGTGGGGAGC TTTACACCTG GGGATCAAAC GAAAATGGGT GCCTTGGAAC AAATTCAACA TATGTCTCAC ACTCACCTGT GAGAGTTGAA GGTCCTTTCT TGGAGTCTAC TGTATCTCAG GTATCTTGTG GGTGGAAGCA CACTGCAGCT ATTTCAGATA ACAAGGTCTT CACCTGGGGC TGGGGAGGCT CTCACGGCAC ATTCTCTGTT GATGGACATT CCTCTGGTGG ACAATTGGGC CATGGTAGTG ATGTAGACTA TGCAAGACCA GCAATGGTGG ACTTGGGAAA GAATGTAAGA GCAGTGCATA TATCTTGTGG CTTCAATCAT ACAGCAGCAG TTCTTGAACA TTTTTGAAGA CTCAGTCTCA ATTTCATATC ATATACAGAT GTTTGGTTTA TTCTTGCTTA AAC 
Length1533
Protein Sequence
Protein Residue
Map Locationscaffold_6: 3487311.. 3490674
Download Sequence
A.thaliana
AGI-codeAT5G08710.1
DescriptionRegulator of chromosome condensation (RCC1) family protein
TAIR curator summary
Alias[RUG1][RCC1/UVR8/GEF-like 1]
Gene coexpression
MR
MR Locus Description
17.6635 Ahg350108
33.4066 Ahg474663 CBS domain-containing protein / transporter associated domain-containing protein
40.8901 Ahg487117 5'-AMP-activated protein kinase-related
43.589 Ahg494019 AIG2-like (avirulence induced gene) family protein
43.9545 Ahg894730 transposable element gene
46.3141 Ahg358320 leo1-like family protein
48.6518 Ahg493485 CBS domain-containing protein with a domain of unknown function (DUF21)
50.2991 Ahg945103 phosphofructokinase 1
51.2543 Ahg933732 Thioredoxin superfamily protein
52.5738 Ahg493140 Oxidoreductase family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression