| Annotation |
|---|
| Description | jgi|Araly1|488026|fgenesh2_kg.6__1160__AT5G11860.3 |
| Sequence |
TTTCGAGCAA ATATTTTACT CTTTATTTCG AAGAGAGAGA GAGAAGAAGA CGGAAGATAG AAGAAAGCGG TTTTGATCGG AGGTAGTGTA TGAGCTAGTG TTTGCAATTT GACGGCTCTC GGGATCTGAT TTATCTCAGG CGTCTGGGCT CTGTCGGTAG CTACAGGGGT GAAAGAGAGT TTCTACAAGG CTTTTAATGG AAGACGATGA CTCTCCTTCT TCCCGGGATT TGGATGCACA GAACCCTTAT GATCGATTGC TTGCTCTAGA TACAAGTACC GTAGATTCAA ATTGTAACTT GGATTCGGTT TCTGCCATTT ATCTAGCGAT GAAGAGCTCG AAGCTGGAAT GTGTTGACGA GCGTGGCCAA GATTCCCTTA TAACTTCGGT ATGCATGGAG GATGAAGAGG ATGAGGAACT CGATGAGTTT GATCCTTATC TGTTTATCAA GAACTTGCCG AACTTGTCTT CTGTTGTCCC AACTTTCAGG CCGGTCTTGC TTCCTAAACA AACCCGGAGC TGTCCTCCTA TTTCTCTAGT CCTAGACCTT GATGAAACTC TTGTGCACTC GACTCTAGAA CCGTGTGGTG AGGTGGATTT CACATTCCCT GTAAATTTTA ATGAAGAAGA GCATATGGTG TATGTGCGGT GCCGTCCTCA CCTCAAAGAG TTTATGGAGA GAGTTTCCCG TCTTTTTGAG ATCATTATAT TTACAGCTAG CCAAAGCATT TATGCCGAGC AACTTCTGAA CGTACTTGAC CCTAAGAGAA AGCTCTTTCG CCATAGAGTG TACCGTGACT CCTGTGTTTT CTTTGATGGT AACTACCTAA AGGATTTGTC AGTCCTTGGG CGTGATTTAT CTCGTGTTAT CATTGTTGAC AACTCCCCAC AGGCATTTGG TTTCCAAGTG GAGAATGGGG TTCCAATAGA GAGCTGGTTT AATGACCCGT CAGATAAAGA ACTCCTTCAC TTGCTCCCAT TTCTTGAAAG CTTAATTGGA GTTGAAGATG TAAGGCCAAT GATCGCCAAG AAATTCAATC TAAGGGAGAA GATCGATGCA GCTGTAGCTG CACCTGAATA TCCTGTTGAG GCGGGAGATC CTTTCGAAAG GTAAAGTCTA TCGCCGAAAA AGTTATAAGC TTTTAAAGGA AGAATCTGGC ATAAGAGCTG AGAGAGAGAT ATATATATAA ATATATCAAT GTTGTTTTCT TATTAGCTTA AATTATGAAC TTGGTATACA GAGAAAGACA GGATAGGCCT GTAAACAGTT TAATGCACAA TAACTGTATA ATTGTCTCTC TTTTCTGGTT TATTTACTAC TAC |
| Length | 1323 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 4623122.. 4625914 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G11860.1 |
| Description | SCP1-like small phosphatase 5 |
| TAIR curator summary | Encodes a SCP1-like small phosphatase (SSP). Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4). |
| Alias | [SSP5][SCP1-like small phosphatase 5] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 10.4881 |
Ahg327556 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 13.0384 |
Ahg478603 | nuclear factor Y, subunit C11 |
| 13.1149 |
Ahg477043 | UDP-Glycosyltransferase superfamily protein |
| 13.8564 |
Ahg477817 | peroxisomal adenine nucleotide carrier 1 |
| 17.3205 |
Ahg496702 | programmed cell death 2 C-terminal domain-containing protein |
| 18.4391 |
Ahg950171 | small ubiquitin-like modifier 2 |
| 25.5147 |
Ahg908546 | Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein |
| 27.2213 |
Ahg328525 | KNOTTED1-like homeobox gene 5 |
| 28.1603 |
Ahg927863 | cytochrome P450, family 87, subfamily A, polypeptide 9 |
| 28.3725 |
Ahg485678 | ser/arg-rich protein kinase 4 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
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| The four seasons |
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| Growth Chamber expression |
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