| Annotation |
|---|
| Description | jgi|Araly1|488188|fgenesh2_kg.6__1322__AT5G13680.1 |
| Sequence |
ATGAAAAATT TGAAGCTTTA CTCCGAGGTT TCTCAGAACA TCCAATTGCA TTCGACCGAA GAAGTTGTAC AGTTCGCAGC TTACGACATC GACCAAAGTC GCTTATTTTT CGCATCTTCT GCTAATTTCG TTTACTCCCT TCAGCTCTCT TCCTTCCAAA ATGGAATATC TGGGAGTGCT TTGCCTGCGG AGGTCTGCAG TATCGATATG GAGCCTGGGG ATTTCATCAC GGCCTTCGAT TATCTGGCGG AGAAGGAGTC TCTATTAATT GGGACTTCTC ATGGGCTTCT GCTACTGCAT AATGTGGAGA GCGATGTGAC TGAGCTAGTT GGAAATATAG AAGGAGGTGT CAAGTGTATC TCGCCTAGTC CGACTGGAGA TCTACTTGGA TTGATTACTG GTCTTGGGCA GTTGCTTGTA ATGACTTATG ATTGGGTTTT GATGTACGAG AGGGCGCTTG GAGAGGTTCC TGAAGGTGGT TACGTACGTG AGGCGGAGGA TGTGTCTGTA AATTGTGGGG GTATTTCCAT TTCCTGGAGA GGTGATGGAA AGTATTTTGC GACTATGGGT GAGGTTTATG AATCCGGTTG TATGTCTAAG AAGATTAAGA TATGGGAAAG TGATTCCGGC GCTTTGCAGT CTTCTTCAGA AACAAAAGAA TTTACGCAGG GGATTCTTGA ATGGATGCCG AGTGGTGCTA AAATCGCAGC TGTTTATAAG AGGAAGTCAG ATGATAGCTG TCCATCAATT GCTTTCTTCG AGAGGAATGG ACTTGAGAGG AGCTCGTTTA GAATTGGTGA ACCAGAAGAT GCTACGGAAT CATGTGAAAC TCTGAAATGG AATTCTGCAT CAGATCTTCT TGCAGGGGTT GTTAGTTGCA AAACATATGA TGCCATTAGG GTGTGGTTCT TTAGCAACAA CCACTGGTAC CTGAAACAGG AGATTAGGTA TCCAAGGGAA GCTGGGGTAA CGGTCATGTG GGATCCAACA AAGCCACTGC AGTTAATATG TTGGACTCTG TCAGGGCAGG TGTCTGTTCG CAACTTTATG TGGGTAACAG CGGTCATGGA GGACTCCACA GCGTTTGTCA TAGATAACTC CAAGATACTC GTGACACCAC TATCTTTGTC CTTGATGCCA CCTCCTATGT ATTTGTTCAG CCTTAGTTTT TCTTCTGCTG TCAGAGATAT AGCATATTAC TCAAGGAATT CTAAGAATTG TCTGGCTGTG TTTTTGTCAG ATGGAAACCT GTCTTTTGTT GAGTTTCCTG CACCTAATAC TTGGGAAGAT CTCGAAGGCA AAGACTTCAT TGTGGAAATA TCAGACTGTA ACACAGCACT GGGCTCTTTT GTACATCTTC TATGGTTGGA TGCCCACTCA CTTCTGTGTG TCTCCGCTTA TGGTTCTAGC CACAACAAGT GTCTCTCTTC GGGAGCGTAT GAGACAGAGC TTCATGGTTC TTATTTACAA GAAGTCGAAG TAGTCTGTCA CGAGGATCAT GTTTCTGATC AAGTGACTTG CTCTGGCTTT AAGGCTAGCG TTACTTTCCA GACACTTCTC GAATCACCGG TCCTGGCTCT TGCCTGGAAT CCTAGTAAGC GTGATTCAGC CTTTGTAGAG TTTGAGGGTG GGAAAGTGCT TGGATATGCA TCAAGGTCAG GAATTATGGA AACTCGTATT AGTGATGATA GTGTATGTTT TCCATCGACT TGTCCTTGGG TGAGGGTGGC GCAGGTTGAT GCTAGTGGGG TGCATAAACC CTTGATATGT GGGCTTGATG ATATGGGTAG ACTGTACATC AACGGGAAGA ACCTATGTAA TAACTGTAGC AGTTTCTCAT TTTATTCAGA GTTGGCCAAT GAAGTGGTTA CCCATCTGAT TATTTTGACC AAACAGGATT TTCTCTTTAT TGTCGATACC AAGGATGTAC TGCAGGGAGA TGTGGCACTT GGAAATGTGT ACTTTGTTAT TGATGGTAGA AGGCGAGATG AGGAAAATAT GAGCTATGTT AATATATGGG AAAGAGGTGC AAAAGTGATA GGAGTCCTCA ATGGAGACGA AGCTGCTGTA ATATTACAAA CTATGCGGGG GAATCTGGAA TGCATATATC CCAGAAAGCT GGTCCTCTCT TCCATTACGA ATGCGTTAGC TCAGCAACGG TTCAAAGATG CATTAAACTT GGTAAGGCGT CATAGAATCG ACTTTAATGT TATCGTGGAT CTATATGGGT GGCAGGCATT TCTACAGTCA GCTGTAGAAT TTGTTGAGCA AGTAAACAAT TTGAACCATG TTACAGAATT TGTTTGTGCC ATGAAGAATG AAGATGTTAC AGAAACACTG TACAAAAAAT TTTCCTTTTC CAAAAAGGGA GACAAAGTTT TTCAAGTGAA AGATCGTTGC AGTAACAAAG TATCATCAGT TCTACTGGCA ATTAGGAAGG CCCTTGAAGA ACATATACCA GAGAGTCCAT CAAGGGAACT CTGTATTTTG ACCACTCTTG CCCGAAGTGA TCCACCAGCT ATTGAAGAAT CTCTTTTGAG GATAAAATCT GTTCGTGAAA TGGAGTTGCT AAACTCTTCT GATGATATAA GGAAAAAGTC TTGTCCATCT GCAGAAGAAG CCTTGAAACA TCTACTGTGG TTATTGGATT CTGATGCTGT CTTTGAAGCT GCCTTAGGTC TTTATGATCT GAACCTTGCA GCTATTGTGG CACTCAATTC CCAGCGTGAT CCAAAAGAAT TTCTACCTTA TCTCCAGGAG CTGGAAAAAA TGCCCGAATC CCTGATGCAT TTCAAGATTG ACATTAAATT GCAGCGTTTT GATAGTGCTC TTAGGAACAT TGTATCAGCA GGGGATGGCT ACTTTCCTGA TTGCATGAAC TTAATAAAGA AAAACCCTCA ACTTTTCCCG CTGGGCCTCC GGCTAATTAC CGATCCTGAG AAGAAACAAG CTGTTCTAGA GGCTTGGGCA GATCATCTCA TTGATGAAAA ACGTTTTGAG GATGCTGCTA CTACGTACCT ATGTTGCTGT AAACTGGAAA AGGCTTCAAA GGCATATCGT GAATGTGGTG ACTGGAGTGG GGTACTCAGA GTGGGGGCGC TAATGAAATT AGGTAAAGAT GAGATCTTGA AATTGGCATA TGAACTCTGT GAAGAGGTGA ACGCTCTTGG GAAACCAGCG GAAGCAGCAA AAATAGCTCT TGAGTATTGC AGAGATATAA GCGGTGGAAT TAGTTTGCTT ATCAATGCAA GGGAATGGGA AGAGGCTTTA AGGGTTGCAT TTTTGCATAC AGCAGATGAT AGAATCTCAG TGGTGAAGAG TTCTGCTCTG GAGTGTGCTA GTGGTCTAGT AAGTGAATTC AAAGAATCAA TAGAAAAGGT AGGAAAATAT TTGACTCGCT ATTTAGCTGT TCGGCAGAGA CGATTATTGC TTGCAGCAAA GCTCAAATCT GAGGAACGGT CAGTAGTTGA TCTGGACGAT GACACAGCTT CAGAGGCTAG TAGCAACCTG AGTGGAATGA GCGCCTATAC TTTGGGGACA AGGAGAGGTT CTGCTGCTTC AGTCAGCTCA AGCACGGCTA CTAGCAGGGC AAGAGATTTG AGGCGCCAGA GAAAGAGCGG GAAAATCCGT GCTGGCAGTG CGGGTGAAGA GATGGCTCTT GTTGATCATT TGAAGGGTAT GCGTATGACC GAAGGTGGAA AGCGAGAGCT GAAGTCTTTG TTGATATGTC TGGTTACAGT TGGTGAAATG GAGTCTGCAC AGAAGTTGCA ACAGACTGCA GAGAATTTCC AGGTCTCGCA AGTAGCAGCT GTAGAGCTAG CACACGATAC AGTGTCCAGC GAGAACGTGG ACGAAGAAGT TTATTGTTTT GAACGTTATG CTCAGAAGAC GAGATCCACA GCAAGAGATT CAGATGACTT TAGCTGGATG CTTAAGGTCT TCATTAGCCC ATGAAAATCT CTACATCTGT TTTTGACTGA ATAAG |
| Length | 3985 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 5313927.. 5318914 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G13680.1 |
| Description | IKI3 family protein |
| TAIR curator summary | A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1–ELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate. |
| Alias | [ABO1][AtELP1][ELO2][ABA-OVERLY SENSITIVE 1][ELONGATA 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.82843 |
Ahg476511 | Pentatricopeptide repeat (PPR) superfamily protein |
| 5.19615 |
Ahg355577 | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain |
| 5.2915 |
Ahg482051 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 5.83095 |
Ahg482837 | AMP deaminase, putative / myoadenylate deaminase, putative |
| 7.74597 |
Ahg478153 | elongation defective 1 protein / ELD1 protein |
| 9.21954 |
Ahg472400 | Calcium-binding EF hand family protein |
| 11 |
Ahg937188 | conserved peptide upstream open reading frame 61 |
| 11.2694 |
Ahg327304 | Zinc finger, C3HC4 type (RING finger) family protein |
| 12 |
Ahg933693 | |
| 13.6382 |
Ahg931973 | Secretory carrier membrane protein (SCAMP) family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|