| Annotation |
|---|
| Description | jgi|Araly1|489289|fgenesh2_kg.6__2423__AT5G24300.1 |
| Sequence |
AGCATGTCGG CGAAGTTGGA AGGAGATTCT TTACGTAGTA GATAGGCCAC CGGTGGTTTC AATCTTCCCC AACAACCAGA CGAAATCCAA CATATATCTG TAACAATCGA AGAAACCCTC ACTCTTCAAT CCATCAATGG CGTCTCTTCA GATCAGTGGC TCCGTTAAAT TCGAGCCGCT CGTTGGATTC AACCGGATCC GCTATTTTCG TCCGATCGGC AGTCTCGGAT TCCCTCGTTT TCGCCGGAGA TTCAGTATCG GACGTCCATT GTTGCTTCGT CGTTCTTCTT CCTTCTCCGG CGGTAAAATC GGTGAGTCTG ATGGTGATGA AAAAGGATTT ATCACTGACG CAGAGAGAGA TGGTTCTGGC TCCGTTCTCG GATTTCAGCT CACTCCTCCT GGTGATCAAG AAATCTTTAG CACTAGCACA GGAGAAATTA CTCATCAAGA AGAGAAGAAA GAGGCTATTG ATGAAACAGT AATGGCTGAT TTTGGTGTAC CTGGAAATAG AGCAGTTGAA GAAGGAGCTG TAGAGGTTGG AATTCCGAGT GGGAAAGCTG AAGTTGTTAA TAACCTTGTT TTCGTTACAT CCGAGGCTGC TCCTTACTCG AAAACAGGAG GATTAGGAGA TGTTTGTGGT TCTTTGCCAA TAGCTTTGGC AGGACGTGGG CACCGTGTTA TGGTCGTTTC TCCTCGGTAC CTCAATGGAA CCGCTGCAGA CAATAACTAT GCTCGGGCTA AGGATTTGGG AATACGTATC ACAGTAAATT GCTTTGGTGG TTCTCAAGAA GTTTCCTTCT ATCATGAATA TAGAGATGGT GTTGATTGGG TTTTTGTTGA TCACAAATCC TACCATAGAC CTGGTAATCC GTACGGAGAT AGTAAAGGAG CCTTTGGTGA TAATCAGTTT CGGTTCACGT TACTTTGCCA TGCCGCATGT GAAGCCCCTC TTGTGCTGCC TCTTGGAGGG TTCACTTACG GAGAGAAATC TCTCTTCCTT GTCAATGACT GGCATGCCAG CCTTGTTCCC ATACTTTTGG CCGCAAAGTA TCGCCCATAC GGAGTTTATA AGGATGCAAG AAGCATTCTC ATTATACATA ACCTCGCCCA TCAGGGAGTG GAGCCAGCAG CTACATACAC CAACTTGGGA TTGCCTTCGG AGTGGTATGG AGCTGTCGGG TGGGTATTTC CAACGTGGGC AAGAACTCAT GCCCTTGACA CCGGTGAAGC GGTTAATGTT CTCAAGGGTG CTATTGTGAC CTCTGACCGT ATCATTACTG TGAGCCAGGG CTATGCATGG GAAATCACTA CTGTCGAAGG TGGTTATGGT CTTCAAGATT TGCTTTCTAG TCGGAAAAGT GTTATAAATG GGATCACGAA TGGAATTAAT GTTGATGAAT GGAATCCATC CACGGATGAA CACATTCCTT TCCATTACTC TGCTGATGAT TTCTCCGAGA AGGTCAAATG CAAGATGGCA CTACAAAAGG AATTGGGTCT CCCCATTAGG CCTGAATGTC CTATGATTGG GTTTATAGGA AGACTTGATT ACCAGAAGGG CATTGATCTG ATCCAAACCG CTGGTCCTGA TCTCATGGTG GATGACATTC AATTCGTCAT GCTTGGTTCG GGTGACCCAA AATATGAAAG CTGGATGAGA AGTATGGAGG AAACATACAG AGACAAATTC CGCGGTTGGG TTGGGTTCAA TGTTCCCATC TCTCATCGAA TCACAGCCGG CTGTGACATT CTTCTCATGC CGTCGAGATT CGAGCCCTGC GGTTTAAATC AGTTATACGC AATGAGATAC GGAACCATTC CAGTTGTTCA TGGCACAGGA GGGCTCAGAG ATACGGTTGA GAATTTCAAC CCTTATGCAG AAGGTGGAGC TGGTGCTGGT ACAGGGTGGG TCTTCACTCC CTTGTCGAAA GATAGCATGG TGTCGGCCTT GAGGTTGGCT GCTGCAACGT ACAGAGAGTA TAAAGAGTCA TGGGAAGGAT TGATGAGAAG AGGAATGACA CGAAACTATT CTTGGGAAAA CGCTGCCGTT CAGTATGAGC AAGTTTTCCA ATGGGTTTTC ATGGACCCTC CCTACGTCAG CTAGACCAAA CACAAACCGA ATCAAACCGA GTTGGACCGG ACCAGACCAG ACCTGACCAA TCAGATGGAG AATGTGGAAC CTCCTCTTCC GGTTATCGAA AATCTATGGT TTTCAACGTT TCCACACATT AAACCGTGTA TCTATTAAAC TCGTACGATA TTTATTTTTG GGGAGGTGTA GAATTTTAGT TATGATTTCT GTCGGTTATG ACATGTGTGT CTTTTCCTAA TTATCTGATA AGACATTATA CGAGTAGACT AATA |
| Length | 2364 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 9969715.. 9973831 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G24300.1 |
| Description | Glycogen/starch synthases, ADP-glucose type |
| TAIR curator summary | SSI is a plastidial enzyme and crucial for the synthesis of normal amylopectin in the leaves of Arabidopsis. The absence of SSI results in a deficiency in the number of shorter glucans which in turn affect the formation and connection of the amylopectin clusters in starch. |
| Alias | [ATSS1][SS1][STARCH SYNTHASE 1][starch synthase 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 5.83095 |
Ahg482590 | |
| 9.84886 |
Ahg481708 | chaperonin-60alpha |
| 26.0768 |
Ahg482714 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 26.3249 |
Ahg950127 | thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) |
| 27.4408 |
Ahg474606 | chaperonin 60 beta |
| 33.6452 |
Ahg922911 | Chlorophyll A-B binding family protein |
| 35.9166 |
Ahg945300 | early nodulin-like protein 2 |
| 39.1152 |
Ahg486818 | |
| 39.4715 |
Ahg933010 | Sodium Bile acid symporter family |
| 39.6485 |
Ahg473970 | Ribosomal L18p/L5e family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|