Detail



ID : Ahg493153

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|493153|fgenesh2_kg.7__2586__AT4G17230.1
Sequence
CAAGCTGATT CTTGAGTATG CAACGAAAAC TTCTCTTTTG TCCCCTTCCA AACAAAATCT CCCAATCAAC AAAATTTCTT CAAAAGGTTA GCTTAGACAG GTTTTTGTTC TCCTTGGTTT GAGCAAGTTA CACTGTAGAG AGTGATTTGG CTAAAAGAAG ATTGATTCCG GAGGTGTATA GTGTATTGCT GGGTTTTTCC AATGCAAACG TCTCAGAAAC ATCACAGTGC GGCTGGACTG CACATGCTGT ATCCTCAAGT CTACTGTTCG CCTCAGTTTC AAGCGAAAGA CAACAATGGC TTCTCTGATA TCCCATCCAA AGAAAACTTT TTTACTCTCG AATCCTCCAC TGCTTCTGGT AGTCTTCCTT CGTATGACTC TCCTTCTGTG AGCATCACAT CTGGCCGGAG CCCGTTTTCT CCTCAGGGCT CTCAATCATG CATCTCGGAT CTCCATCTTT CCCCTGACAA CGTCTATGGA TCACCCTTGA GTGGGGTGTC TTCTTTTGCC TATGATGAAG CTGGGGTCAA GAGTAAGATT CGGGAACTTG AGGTCTCGCT GCTGAGTGGT GATACAAAAG TTGAAGAATT CTCTGGTTTC AGCCCTGCTG TTGGGAAGTC GTGGAACTGG GATGAACTCT TGGCTTTGAC TCCGCAGTTG GACTTGAAAG AGGTGCTGGT GGAGGCCGCT CGGGCAGTCG CTGATGGGGA TTTTGCTACA GCGTATGGAT TCCTCGATGT CTTGGAACAG ATGGTGTCGG TCTCAGGCAG TCCGATCCAA CGGCTAGGCA CTTACATGGC AGAAGGGCTT AGAGCAAGGC TTGAGGGGTC TGGGAGCAAT ATATACAAAG CCTTGAAATG CAATGAACCA ACGGGAAGGG AACTGATGTC TTACATGAGT GTTCTCTATG AAATCTGCCC CTACTGGAAA TTCGCGTACA CAACAGCAAA TGCTGCGATC TTGGAAGCAA TAGCTGGGGA AACCAGAGTC CACATTATCG ATTTTCAGAT TGCGCAGGGA TCACAATACA TGTTTTTGAT CCAGGAGCTT GCGAAACGCC CTGGTGGGCC GCCGTTTCTG CGTGTGACGG GTGTGGACGA TTCACAGTCC ACCTATGCTC GTGGGGGAGG GCTCAGCCTT GTAGGTGAGA GGCTCGCAAA GTTGGCGCAG TCATGTGGTG TCCCGTTTGA GTTTCACGAT GCTATCATGT CTGGGTGCAA GGTGCAGCGG GAACACCTCG GGGTGGAACC TGGCTTTGCT GTTGTTGTGA ACTTCCCATA TGTGTTACAC CACATGCCTG ACGAGAGCGT AAGTGTTGAA AATCACAGAG ACAGGCTGCT GCATCTGATC AAGAGCCTCT CCCCAAAACT CGTTACTCTA GTGGAGCAAG AATCAAACAC AAACACCTCG CCTTTCCTGT CACGGTTTGT GGAGACACTG GATTACTACA CAGCGATGTT TGAGTCGATA GATGTAGCGC GGCCACGGGA TGATAAGCAG AGAATCAGCG CAGAACAACA CTGCGTAGCA AGAGACATAG TGAACATGAT AGCGTGCGAG GATTCAGAGA GAGTAGAGAG ACACGAGGTG CTGGGGAAAT GGAGGGTGAG AATGATGATG GCTGGGTTCA CGGGCTGGCC AGTCAGCACA TCCGCAGCGT TTGCAGCAAG TGAGATGCTG AAAGGTTATG ACAAAAACTA CAAACTGGGA GGGAATGAAG GAGCGCTATA TCTCTTCTGG AAGAGACGAC CCATGGCTAC ATGTTCCACG TGGAAGCCAA ACCCAAACCC AAACCAGATT GGGTAAATTA TAGTGATGAT GGTGACTTGA GTGGATGAAG AGCACAACAA AAACACATCT GTCGCTGTAA ATTTTTGAGG ATGTGCAATG ATGTTTAAGT TGTAATACAA CCTAAGTTAT ATATGTATAC AAACCAAACC TGGTGGTTGT TTTTTCTCTT GTAAATTTTC ATGTGTGAAA TATAACCAAA ACATTGATTA GGTC 
Length2004
Protein Sequence
Protein Residue
Map Locationscaffold_7: 10848213.. 10851005
Download Sequence
A.thaliana
AGI-codeAT4G17230.1
DescriptionSCARECROW-like 13
TAIR curator summaryEncodes a scarecrow-like protein (SCL13). Member of GRAS gene family.
Alias[SCL13][SCARECROW-like 13]
Gene coexpression
MR
MR Locus Description
3.4641 Ahg934970 Calcium-binding EF-hand family protein
5.83095 Ahg480360 vacuolar sorting receptor 4
8.24621 Ahg481065 related to KPC1
10.7703 Ahg951497 SKP1/ASK1-interacting protein 2
11.0454 Ahg477807 RING/U-box superfamily protein
11.4891 Ahg934359 PLAC8 family protein
13.1149 Ahg470110 SIGNAL PEPTIDE PEPTIDASE-LIKE 4
14.4222 Ahg489449 ferrochelatase 1
16.3707 Ahg477185
16.7929 Ahg929176 RELA/SPOT homolog 2
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression