| Annotation |
|---|
| Description | jgi|Araly1|493326|fgenesh2_kg.7__2759__AT4G15560.1 |
| Sequence |
AAATTTTATT CTCCATAAAT CTTTATATTA CTTACTTACA TTCCCAAAGT TTTCAACTTT CTCTTCTGAG GTTCAAAAAG TTGAAATGGC TTCATCTGCA TTTGCTTTTC CTTCTTACAT AATAACCAAA GGAGGAGTTT CAACAGATTC TTGTAAATCA ACTTCTTTGT CTTCTTCTCG ATCTTTGGTT ACAGATCTTT CATCGCCATG TCTCAGACCC AACAACAATT CCCATACAAA CAGAAGAGCA AAAGTGAATG CTTCACTTGC AGAGAAGGGT GAATATTATT CAAACAGACC ACCAACTCCA TTACTTGACA CTATTAACTA TCCAATTCAC ATGAAAAATC TTTCTGTCAA GGAGCTGAAA CAACTTTCTG ATGAGCTGAG ATCAGATGTG ATCTTTAATG TGTCGAAAAC CGGTGGACAT TTGGGGTCGA GTCTTGGTGT TGTGGAGCTT ACTGTGGCTT TGCATTACAT TTTCAATACT CCACAGGATA AGATTCTTTG GGATGTTGGT CATCAGTCTT ATCCTCACAA GATTCTTACT GGGAGAAGAG GAAAGATGCC TACAATGAGG CAAACCAATG GTCTCTCGGG TTTCACGAAG CGAGGAGAGA GCGAACATGA TTGCTTTGGT ACCGGACACA GTTCAACCAC AATATCTGCT GGTTTAGGAA TGGCGGTAGG ACGGGATTTG AAGGGGAAGA ACAACAATGT GGTTGCTGTG ATTGGTGATG GTGCAATGAC GGCAGGGCAG GCTTATGAAG CCATGAACAA CGCTGGCTAT CTTGACTCTG ATATGATTGT GATTCTTAAT GACAACAAGC AAGTCTCATT ACCTACAGCT ACTTTGGATG GACCAAGTCC ACCTGTTGGA GCATTGAGCA GTGCTCTTAG TCGGTTACAG TCTAACCCGG CTCTCAGAGA GTTGAGAGAA GTCGCAAAGG GTATGACAAA GCAAATAGGT GGACCAATGC ATCAGTTGGC TGCTAAGGTA GATGAGTATG CCCGAGGAAT GATAAGCGGG ACTGGATCGT CACTGTTTGA AGAACTTGGT CTTTACTATA TTGGTCCAGT TGATGGGCAC AACATAGATG ATTTGGTAGC CATTCTTAAA GAAGTTAAGA GTACTAGAAC CACAGGACCG GTACTTATTC ATGTGGTGAC GGAGAAAGGT CGCGGTTACC CTTACGCGGA GAGAGCTGAT GACAAATACC ATGGTGTTGT GAAATTCGAT CCAGCGACGG GTAAACAGTT CAAAAGTACT AATAAGACGC AATCTTACAC TACTTACTTT GCGGAGGCAT TAGTGGCAGA AGCAGAGGTA GACAAAGATG TGGTTGCGAT TCATGCAGCC ATGGGAGGTG GGACCGGGTT AAATCTCTTT CAACGTCGCT TCCCAACAAG ATGTTTCGAT GTCGGAATAG CGGAACAACA CGCAGTTACT TTTGCTGCGG GTTTAGCCTG TGAAGGCCTT AAGCCCTTCT GTGCAATCTA TTCATCCTTC ATGCAGCGTG CTTATGACCA GGTTGTACAT GATGTTGATT TGCAAAAATT ACCAGTGAGA TTTGCGATGG ATAGAGCTGG ACTTGTTGGA GCTGATGGTC CAACACATTG TGGAGCTTTT GATGTGACAT TTATGGCTTG TCTTCCTAAC ATGATTGTGA TGGCTCCATC AGATGAAGCA GATCTGTTTA ACATGGTTGC AACCGCTGCT GCGATTGATG ATCGTCCTTC TTGTTTCCGT TACCCTAGAG GTAATGGTAT TGGAGTTGCA TTACCTCCCG GTAACAAAGG TGTTCCAATT GAGATTGGAA AAGGTAGGAT TTTAAAGGAA GGAGAGAGGG TTGCGCTGTT GGGTTATGGC TCAGCAGTTC AGAGCTGTTT AGGAGCGGCT GTAATGCTTG AAGAACGCGG ATTAAACGTA ACTGTAGCAG ATGCACGATT TTGCAAGCCA TTGGACCGTG CTCTCATTCG CAGCTTAGCT AAGTCGCATG AGGTTCTGAT CACGGTTGAA GAAGGTTCGA TTGGAGGGTT TGGATCGCAC GTTGTTCAGT TTCTTGCTCT CGATGGTCTT CTCGATGGCA AACTCAAGTG GAGACCAATG GTACTGCCTG ATCGGTACAT TGATCACGGT GCACCAGCTG ATCAACTAGC TGAAGCTGGA CTCATGCCAT CTCACATCGC AGCAACCGCA CTTAACTTAA TCGGTGCACC AAGGGAAGCT CTGTTTTGAG AACAAGAATC GGTTGGCTAA AACATATATA TACAAACACT CTAAATGCAA CCCAAGGTTT CTTCTAAGTA CTTGATGAAA ATTCCCGCCG AAAAGTCCTT TGGCAACAGC TATATATTTA CTAAGATGGT GAAGAGAAAG GCAAAGGCAA AGGTTGTGCA AAGATTAGTA TTATGGTAAA ACTGGTATTT GTTTTGTAAT TTTTGGTTAG GGGTGTGATG GAGATCGAGT TGTACAATAA TCATCTAACA TCTTGTAAAA ATAAATTACA TTTCTTTGTG TATCTTTCAT ACCATTGTGT GA |
| Length | 2542 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 11990046.. 11993478 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G15560.1 |
| Description | Deoxyxylulose-5-phosphate synthase |
| TAIR curator summary | Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis |
| Alias | [AtCLA1][CLA][CLA1][DEF][DXPS2][DXS][DXS1][CLOROPLASTOS ALTERADOS 1][1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2][1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE][1-deoxy-D-xylulose 5-phosphate (DXP) synthase 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 9.48683 |
Ahg485048 | plastid transcriptionally active 16 |
| 12.7279 |
Ahg923621 | Photosystem II 5 kD protein |
| 15.748 |
Ahg492755 | photosystem II subunit QA |
| 22.5389 |
Ahg474340 | photosystem I subunit H2 |
| 24.5967 |
Ahg494137 | Ribulose bisphosphate carboxylase (small chain) family protein |
| 24.7386 |
Ahg918978 | photosystem I subunit D-2 |
| 26.0768 |
Ahg947862 | Protein of unknown function (DUF1997) |
| 27.9285 |
Ahg472262 | Cupredoxin superfamily protein |
| 28 |
Ahg941545 | Plastid-lipid associated protein PAP / fibrillin family protein |
| 28.8444 |
Ahg483311 | Rhodanese/Cell cycle control phosphatase superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|