| Annotation |
|---|
| Description | jgi|Araly1|493637|fgenesh2_kg.7__3070__AT5G35840.1 |
| Sequence |
TCTTCTTCCC CCTTCCTCTC TCAGCTTCTC TTCTCACACC ACTACTAAGG AACATTCCAA AGATCCTCTC TCTCAGAGAA TTCGCAGCAA AATCTCCAAG AAAACGAAAC CCTAATGAGT ACTCAATCGG ATCCTTGAAT CCTTTGGTTT GTCTCCATTT CTGAAATTTT TTTATTCGTT TTGAAGAGAA GAAAATATGT CATCGAACAC TTCACGAAGC TGTTCTACTA GATCTAGAAA AAACTCTCGA GTTTCTTCAC AAGTTCTCGT CGACGCAAAG CTACACACAA ACTTCGAAGA ATCTGAGCGT TTATTTGACT ATTCAGCTTC AATAAACTTG AACATGCCAA GTTCTTCTTC CTGTGAAATT CCTTCTTCAG CTGTCTCAAC TTACTTACAG AAGATTCAGA GAGGGATGTT GATTCAACCT TTCGGTTGTT TAATCGTTGT TGATGAAAAA AAACTTAAAG TCATTGCCTT TAGTGAAAAC ACTCAAGAGA TGTTGGGTTT GACTCCACAC ACAGTACCAA GTATGGAGCA GCGTGAAGCT TTGAGTATAG GAACTGATGT GAAGTCATTG TTTCAGTCTC CAGGTTGTTC TGCTTTGCAG AAAGCTGTTG ACTTTGGTGA GATTAGTATT TTGAATCCGA TTACGCTTCA TTGTAGGTCT TCAAGTAAGC CTTTTTATGC GATTTTGCAT CGGATTGAGG AAGGTCTTGT TATAGATTTG GAGCCTGTTA GTCCGGATGA GGTGCCTGTG ACTGCTGCTG GGGCTTTGAG ATCGTATAAG CTTGCGGCGA AATCGATTTC GAGATTGCAG GCATTGCCTG GTGGGAATAT GTTGTTGCTG TGTGATGCTT TGGTTAAGGA AGTTAGTGAA TTAACTGGTT ATGATAGGGT GATGGTGTAT AAGTTCCATG AAGATGGGCA TGGGGAAGTG ATTGCTGAAT GCTGCAGGGA TGATTTGGAA CCTTATCTTG GGTTGCATTA CTCCGCTACT GATATACCGC AAGCTTCGAG ATTTCTCTTT ATGAGAAACA AGGTTAGGAT GATTTGTGAT TGTTCAGCGG TTCCAGTTAA AGTAGTTCAA GATAAGAGTC TCTCACAGCC GATAAGTCTT TCTGGATCTA CTTTGAGAGC TCCTCATGGT TGTCATGCAC AGTATATGAG TAATATGGGA TCAGTGGCGT CTCTTGTTAT GTCTGTAACA ATTAATGGTA GCGATAGTGA TGAGATGAAC AGAGATTTAC AGACTGGCAG ACACTTATGG GGCTTGGTGG TTTGTCATCA CGCAAGTCCT AGGTTCGTGC CGTTTCCATT ACGATATGCT TGTGAGTTCT TGACTCAAGT ATTTGGCGTG CAGGTCAACA AAGAAGCGGA ATCAGCTGTT CTGTTGAAAG AAAAGCGTAT TTTGCAAACT CAAAGTGTGC TATGTGACAT GCTTTTTCGC AATGCACCAA TAGGTATAGT CACTCAGTCA CCAAATATAA TGGATCTTGT TAAATGTGAT GGAGCAGCCC TTTATTACAG AGAGAAGCTC TGGTCTCTAG GGGTTACTCC TACTGAGACA CAAATTAGAG ATCTAATCGA TTGGGTTCTC AAAAGTCATG GAGGAAACAC TGGCTTTACC ACTGAAAGTC TAATGGAGTC TGGCTATCCG GATGCTTCTG TTCTTGGGGA GTCAATCTGT GGAATGGCTG CTGTACATAT AACCGATAAA GATTTCCTTT TCTGGTTTCG GTCTGGCACT GCAAAACAGA TCCAGTGGGG TGGTGCAAGA CATGATCCTA ACGACAGGGA TGGTAAGAGG ATGCATCCTA GATCCTCATT CAAGGCATTT ATGGAAATTG TTAGGTGGAA AAGTATGCCC TGGGATGACA TGGAAATGGA TGCAATTAAT TCTCTGCAGC TAATAATAAA AGGCTCATTG CAAGATGAGC ATTCAAAAAC TGTTGTGAAT GTCCCGTTTG TGGATAATAG GGTTCAGAAG GTAGATGAAT TGTGTGTTAT CGTGAATGAA ATGGTGCGCT TGATTGATAC AGCAGCTGTT CCGATCTTTG CTGTTGATGC TTCTGGTGTT ATAAACGGTT GGAATACTAA AGCGGCTGAG GTATCTGGAT TGGCAGTTGA ACAAGCAATA GGCAAACCTG TATCAGATCT CGTTGAGGAC GATTCTGCAG AAACCGTAAA GAACATGTTA GCATTGGCTC TCGAAGGTAG TGAAGAACGT GGTGCTGCGA TCAGGATCAG AGCATTTGGT CCTAAAAGGA AAAGCAGTCC GATTGAGTTA GTTGTCAACA CTTGCTGTAG CAGAGATAGG ACGAATAATG TTCTTGGTGT ATGCTTTATT GGACAAGATA TTACAGGCCA GAAAACGCTT ATTGAAAACT ATAGCCGCGT GCAAGGAGAT TATGCCCGAA TCATGTGGAG CCCGTCCACA CTCATTCCAC CAATTTTTAT GACCAATGAA AATGGGTTAT GCTCAGAGTG GAACAATGCA ATGCAGAAGC TCTCTGGGAT AAAGAGAGAA GAAGTTGTCA ATAAAATGCT TCTCGGTGAG GTTTTTACCT CAGATGATTA TGGTTGCCGC CTGAAAGACC ATGACACTTT AACTAAGCTG CGAATAGGTT TCAATGCTGT GATTTCTGGG CAGAAGAACA TAGAGAAGCT TTTATTTGGC TTTTACCATC GTGATGGTAG CTTCATCGAG GCTTTACTTT CTTCAAACAA AAGGACTGAT ATTGAGGGAA AGGTTACCGG GGTTTTATGC TTTTTGCAAG TACCTAGTCC AGAACTCCAA TATGCTCTAC AGGTTCAGCA AGTATCCGAG CAGGTGATCG CCTGTGCCTT CAACAAATTG GCATATTTCC GCCAAGAAGC AAAGAACCCA CAACAGGCAA TTTCTTTCCT TCAAGATTTG CTACATTCAT CTGGATTAAG TGAAGATCAA AAGCAGCTCT TGAGGACAAG CGTTTTATGC AGGGAGCAGT TAGCCAAAGT CATAAGCGAC TCAGACATAG ACGGAATCGA AGAAGGCTAT GTGGAACTGG ATTGCAGCGA ATTTAACCTT GAGGAATCCC TGGAAGCAGT TGTAAAACAA GTGATGGAGC TGAGCATAGA ACGTAAAGTG CAGATCATCT GCGATTATCC TCAAGAAGTT TCGTCAATGA GACTGTATGG AGACAACCTA AGGCTTCAGC AAATCCTCTC AGAGACACTC TTAAGCAGCA TACGCTTCAC GCCTGCATTG AAAGGATTGT GTGTCTCATT CAAGGTAATT GCACGGATAG AAGCTATAGG GAAAATAATG AAAAGAGTCG AGCTAGAGTT CAGGATAATA CACCCGGCAC CGGGACTGCC TGAGGATCTG GTAAGAGAGA TGTTCCAGCC TTTGAGGAAA GGAACATCAA GGGAAGGTTT GGGATTACAC ATCACCCAGA AGCTGGTGAA ACTCATGGAG AGAGGAACAT TGAGATACCT CAGAGAGTCT GAAATGTCAG CCTTTGTGAT CGTCTCAGAA TTTCCCTTGA TTTGAATCAG AAGACGTGTT TTTGAAAGTC TAATTTTTTT TTCTCTCACA TAAATAAATG TATGTTTGTT ACTGTAACAT AAATATAGGA AAGTTAAAT |
| Length | 3629 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 17743837.. 17747730 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G35840.1 |
| Description | phytochrome C |
| TAIR curator summary | Encodes the apoprotein of phytochrome;one of a family of photoreceptors that modulate plant growth and development. |
| Alias | [PHYC][phytochrome C] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.23607 |
Ahg946347 | RNA helicase family protein |
| 2.82843 |
Ahg489660 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 4.47214 |
Ahg480415 | Putative endonuclease or glycosyl hydrolase |
| 17.0294 |
Ahg490276 | Pentatricopeptide repeat (PPR) superfamily protein |
| 21.2132 |
Ahg476390 | ARM repeat superfamily protein |
| 21.2368 |
Ahg475897 | PAS domain-containing protein tyrosine kinase family protein |
| 21.5639 |
Ahg471132 | NF-X-like 1 |
| 21.6795 |
Ahg488740 | GTP1/OBG family protein |
| 23.8747 |
Ahg483691 | WD-40 repeat family protein / beige-related |
| 26.7208 |
Ahg920110 | MBOAT (membrane bound O-acyl transferase) family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|