| Annotation |
|---|
| Description | jgi|Araly1|494737|fgenesh2_kg.8__553__AT5G42820.1 |
| Sequence |
CTCTCTCTCT CTCTCCGGCT CACACGAGTC GCTAATCAAA TAACCCTAAA CCCTAGATCG TGATCGGAAA CAACACCTCC TCGTCGGCGA TAGCTTCTCT TCCACTAAAA GCAACTCCTC TTCGGTGAAA ATGGCAGAGC ATTTGGCTTC AATCTTTGGT ACTGAAAAAG ATAGAGTGAA TTGTCCGTTT TACTTTAAGA TTGGTGCTTG TCGTCACGGT GACCGGTGCT CACGGCTTCA TAACCGTCCC ACTATCTCCC CGACGCTCCT TCTCTCGAAC ATGTATCAGA GACCTGACAT GATAACTCCA GGTGTGGATC CTCAGGGTCA GCCATTAGAC CCGAGTAAGA TCCAAGACCA CTTTGAGGAT TTCTATGAAG ATATTTTCGA AGAACTTAAC AAGTTTGGTG AAGTGGAGAG TCTCAATGTT TGTGATAACC TTGCTGATCA TATGATTGGG AATGTGTATG TTCTGTTTAA GGAGGAGGAT CACGCTGCTG CTGCGTTGCA GGCTTTGCAA GGGAGGTTTT ACTCTGGACG TCCTATCATT GCTGATTTCT CTCCTGTGAC GGATTTCCGG GAAGCTACTT GTAGGCAGTA TGAAGAAAAC AGTTGTAACC GTGGTGGGTA TTGTAATTTC ATGCATGTGA AGCAGATTTC GAGGGAGCTT AGGAGGAAAT TGTTTGGGAG GTATCGTCGG TCATACCGCC GGGGAAGTAG AAGCCGGAGC AGGAGTATAA GCCCTCGACG CAAGAGAGAG CATTCGCGGG AGCGAGAGAG AGGGGATTTG AGGGACCGTG ACCGCCATGG AAATGGGAAA CGAAGCAGTG ATAGATCAGA GAGGCATGAT CGAGATGGTG GTGGAAGAAG GAGACATGGA AGCCCGAAAC GGAGCAGAAG TCCACGAAAT GTGAGAGAAG GAAGTGAGGA AAGGAGGGCA AGAATTGAGC AATGGAACCG AGAACGCGAT GAGGGAGTTT AAGAGTAATG TTTGGACTGA TTGCTTCAGA AATCGGTAAA ATCTTGTAAT GGATATTCAT TTGGTGTTCT GTTTTGGAAC TTGAAAAATG AGTGGCATGA GCTCCTTAGA TGATGTAAGG TGTTTATTGT ATCTTGTAGA ATTTTGTTTA GAAACTAGTT CGTGAGGCAA ATGTTGGTTT CAGTTTTTCT AAATTAATGT GGTAATGATC CTTTGGTTAT TGTTCTTCAT G |
| Length | 1211 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 5300964.. 5302489 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G42820.2 |
| Description | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| TAIR curator summary | U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog, atU2AF35a, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. |
| Alias | [ATU2AF35B][U2AF35B] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg920156 | Transducin/WD40 repeat-like superfamily protein |
| 2 |
Ahg929675 | nuclear RNA polymerase D2B |
| 2 |
Ahg480631 | Seven transmembrane MLO family protein |
| 3.87298 |
Ahg931790 | coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative |
| 4.24264 |
Ahg492272 | Cleavage/polyadenylation specificity factor, 25kDa subunit |
| 4.89898 |
Ahg331786 | CLUB |
| 6.245 |
Ahg487909 | Protein of unknown function (DUF1336) |
| 6.7082 |
Ahg496218 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein |
| 7.74597 |
Ahg479746 | putative mitochondrial RNA helicase 2 |
| 9.38083 |
Ahg942897 | mRNAadenosine methylase |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
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| Growth Chamber expression |
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