| Annotation |
|---|
| Description | jgi|Araly1|929675|scaffold_302132.1 |
| Sequence |
GTGTGTTTTG AGGTATACCA GAGATGGACA TTAATGAGAT GGATATTGAC GAGATCGAGA CTGCTGGGCA GATGAATCTT TCTGAGCTAG GAGAAAGTTT TCTCCAAAGT TTCTGCAAAA AAGCTGCTAC ATCCTTCTTT GAAGAGTATG GGCTTATAAG TCATCAGCTC AACTCCTACA ACTTCTTCAT CAAACACGGG CTTCGGAATG TGTTCGAGTC CTTTGGTGAG ATGCTTGTGG AACCGTCTTT TGATGTAATA AAGAAGAAGG ATGGCGATTG GAGATACGCA ACAGTGAAAT TCGGAGAAGT CACTTTTGAG AAGCCCACAT TCTTTTCGGA TGACAAGGAG CTTGAGTTTC TCCCATGGCA TGCCAGGCTT CAGAACATGA CATACTCAGC AAGGATCAAA GTGAATGTCC AAGTTGAGGT GTTCAAAAAA ACTGTTGTTA AAAGCGACAA ATTCAAGACG GGACAAGATG AATATGTCGA GAAGGAGATA CTGGATGTCA AAAAGCAGGA CATTCTAATT GGTAGCATTC CTGTCATGGT GAAATCTGTC CTTTGCAAAA CAAGCGAGAA AGGAAAAGAA AACTGCAAAA AGGGGGATTG TGCCTTTGAT CAGGGTGGTT ATTTTGTGAT AAAGGGGGCT GAGAAGGTGT TTATAGCTCA AGAACAGATG TGCACAAAGA GACTGTGGAT TTCTAATTCA CCATGGACTG TCTCCTTCAG GTCCGAAACT AAAAGAAATA GGTTCATTGT GCGCCTCTCG GAGAATGAGA AAGCAGAAGA CTATAAGAGA AGGGAGAAAG TACTGACAGT GTACTTCTTG TCGACGGAGA TTCCAGTCTG GCTCTTGTTC TTTGCGCTGG GTGTTTCGTC AGACAAAGAA GCCATGGATC TAATTGCTTT TGATGGTGTT GATGCAAGCA TTACCAACAG TCTCATAGCT TCTATCCATG AAGCTGATGC AGTTTGTGAA GCTTTTCGCT GTGGGAACAA TGCCCTAACA TATGTTGAAC ATCAGATCAA AAGCACCAAA TTCCCTCCTG CTGAAAGTGT GGATGATTGC CTCCGTCTGT ATTTGTTTCC AGGCCTCCAA GGTTTGAAGA AGAAAGCCCG ATTCCTGGGC TATATGGTGA AGTGCCTTCT GAGTGCGTAT GCGGGAAAAC GAAAATGTGA AAACAGGGAC AGTTTCCGGA ATAAGCGAAT TGAGCTCGCT GGAGAACTGT TGGAAAGGGA AATAAGGGTG CATCTGGCAC ATGCTAGGAG AAAGATGACA AGGGCCATGC AGAAACAACT CTCAGGCGAG GGAGATTTGA AGCCTATTGA GCATTATTTG GATGCTTCTG TTATCACAAA TGGGCTTAAT CGAGCCTTCT CCACTGGAGC ATGGTCTCAT CCTTTCAGGA AGATGGAAAG GGTTTCAGGT GTTGTAGCTA ATTTGGGTCG TGCAAATCCA TTGCAGACTC TGATTGATCT GAGGAGAACG CGACAGCAAG TCCTATATAC CGGCAAGGTT GGAGATGCTA GATATCCGCA TCCCTCTCAC TGGGGCAGAG TATGCTTTTT GTCAACTCCA GATGGTGAAA ATTGTGGTCT TGTGAAGAAC ATGTCTCTTC TTGGACTTGT TAGCACTCAA GTTTTGGAGT CTGTGGTGGA AACGCTCTAT GCTTGTGGAA TGGAAGAGCT GATGGATGAT ACCAGCACAC CATTGTGTGG CAAACACAAA GTTCTTCTCA ATGGAGACTG GGTTGGATTA TGTGCAGATT CTGAATCCTT TGTCGCGGAG TTAAAAAGCA GGCGGCGCCA AAGTGAATTA CCTCGTGAGA TGGAAATCAA GCGAGATAAA GATGACAATG AGGTGAGAAT TTTCACTGAC GCTGGTAGAC TACTCCGACC TCTCTTGGTT GTGGAAAATC TCCACAAGTT GAAGCAAGAC AAACCTACAC AGTATCCTTT TAAGCATCTT CTTGACCAAG GGATTCTCGA GCTGATCGGG ATTGAGGAAG AAGAAGACTG TAATACAGCA TGGGGAATCA AACAGCTTCT GAAGGAACCA AAGAATTACA CGCATTGCGA ATTGGACCTG TCATTCCTGT TGGGTGTGAG CTGTGCAATT GTCCCATTTG CAAATCACGA TCATGGGAAA AGAGTTCTCT ACCAGTCCCA GAAGCATTGC CAACAAGCCA TTGGATTCTC ATCAACGAAC CCTAACATCC GCTGCGATAC TCTGTCCCAG CAGCTGTTCT ATCCCCAGAA GCCACTGTTC AAGACATTGG CGTCGGAGTG TCTAAAAAAA GAAGTGCTGT TTAATGGCCA GAACGCAATT GTTGCTGTGA ATGTTCATCT CGGGTACAAC CAAGAGGATT CCATTGTGAT GAACAAGGCT TCATTGGAAC GTGGTATGTT CCGTTCAGAG CAGATTAGAA GCTACAAAGC AGAGGTTGAT ACTAAAGACT CGGAGAAGAG GAAGAAGATG GATGAGCTTG TTCAGTTTGG AAAGACATAC AGCAAAATCG GCAAAGTAGA CAGCCTTGAA GATGACGGGT TTCCTTTCAT TGGTGCTAAC ATGAGTACTG GAGATATTGT CATTGGCAGA TGCACCGAGT CTGGGGCTGA TCACAGTATA AAGCTCAAGC ACACTGAGAG AGGAATTGTG CAAAAAGTGG TATTATCATC TAATGATGAA GGGAAGAATT TTGCTGCGGT TTCTCTGAGA CAGGTTCGTT CTCCATGCCT TGGAGATAAG TTTTCCAGTA TGCATGGCCA GAAGGGTGTT TTAGGCTATC TAGAGGAACA GCAGAATTTT CCTTTCACGA TCCAAGGCAT AGTTCCTGAT ATTGTTATAA ACCCGCACGC TTTCCCTTCT AGGCAAACAC CAGGTCAACT CTTGGAGGCT GCTCTCTCCA AAGGAATCGC TTGTCCTATA CAAAAGAAGG AGGGTAGCTC TGCTGCATAC ACCAAATTGA CACGTCATGC CACTCCTTTC TCCACTCCGG GTGTCACTGA AATCACCGAG CAGCTTCACA GGGCCGGCTT TTCAAGATGG GGAAACGAAA GGGTCTACAA TGGTAGATCG GGTGAGATGA TGCGTTCTCT GATATTCATG GGCCCAACTT TCTACCAGCG ACTTGTCCAC ATGTCAGAGG ACAAAGTCAA GTTCAGGAAC ACCGGACCAG TCCACCCGCT CACACGTCAG CCAGTCGCAG ACAAGAAGAG GTTTGGCGGA ATAAAATTTG GAGAAATGGA GCGAGACTGT CTAATAGCTC ACGGTGCATC CGCTAATCTG CACGAGCGTC TCTTCACTCT AAGTGACTCT TCTCAGATGC ACATCTGCAG AAAATGTAAG ACCTATGCGA ATGTGATCGA GAGGACTCCA AGCAGTGGAA GAAAGATCAG AGGGCCATAT TGTAGAGTCT GCGCGTCCTC AGACCATGTG GTTAGGGTCT ATGTTCCGTA TGGAGCTAAG CTTCTGTGTC AGGAGCTGTT CAGCATGGGC ATCACTCTCA ATTTCGACAC CAAGCTCTGC TGATTCCCCG CCTTTGTTAT GTA |
| Length | 3553 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 7282307.. 7287557 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G18090.1 |
| Description | nuclear RNA polymerase D2B |
| TAIR curator summary | Encodes a subunit of RNA polymerase IV (aka RNA polymerase D). NRPD2b is closely related to NRPD2a, but has lower levels of transcription and does not affect endogenous siRNA when mutated. |
| Alias | [NRPD2B][nuclear RNA polymerase D2B] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg940624 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 2 |
Ahg494737 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| 4 |
Ahg351718 | ATPase family associated with various cellular activities (AAA) |
| 4.58258 |
Ahg933869 | centromere/kinetochore protein, putative (ZW10) |
| 6 |
Ahg471559 | sec7 domain-containing protein |
| 6.245 |
Ahg945078 | Protein of unknown function (DUF3531) |
| 6.245 |
Ahg898458 | Cleavage and polyadenylation specificity factor (CPSF) A subunit protein |
| 6.7082 |
Ahg489579 | seryl-tRNA synthetase / serine--tRNA ligase |
| 7.34847 |
Ahg897634 | Ubiquitin carboxyl-terminal hydrolase-related protein |
| 7.48331 |
Ahg483616 | Ribosomal protein L24e family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|