| Annotation |
|---|
| Description | jgi|Araly1|494955|fgenesh2_kg.8__771__AT5G48910.1 |
| Sequence |
TTGATTCTCA ATGAACCCAA CACAGACCCT TTACTCTCCC GGCGGTAACC CTCCGGCATC TTCCCTCTTT CCTCAAATCA ACAACTGTCG AACTATAAGA GACCTCTCTC AAATCCATGC CGTTTTCATC AAATCTGGTC AAATTCGAGA CACTCTCGCC GCCGCAGAGA TTCTTCGATT CTGTGCGACC TCCGATCTCA ACCACCGTGA CCTTGATTAC GCACACAAGA TCTTTAATCA AATGCCTCAA CGAAATTGCT TCTCTTGGAA TACTATAATC AGAGGTTTTA GTGAGAGTGA CGAAGACAAA GCTCTAATTG CAATCACATT GTTCTTTAAG ATGATGAGTG ATGAGTTTAT CGAACCGAAC CGGTTTACGT TTCCGTCTGT GCTTAAGGCG TGTGCGAAAA CTGGGAAGAT TCAAGAAGGT AAGCAGATTC ATGGTTTGGC TTTGAAGTAT GGATTTGGTG GTGATGAGTT TGTGATGAGT AATCTTGTTA GAATGTATGT GATGTGTGGT TTGATGAAAG ATGCTTGTGT TTTGTTTTAT AAGAACATTA TTGAGAGAGA GATGGTGGTG ATGATTGATA GAAGAAAGAG AGATGGTGAA GTTGTTTTAT GGAATGTTAT GATTGATGGT TATATGAGAC TTGGTGATTG TAAAGCTGCA AGGATGTTGT TTGATAAAAT GCGTCAAAGA AGCGTTGTTT CGTGGAATAC GATGATATCG GGTTATTCGC AGAACGGTTT TTTTAAGGAT GCTGTTGAGG TTTTTCGTGA GATGAAGAAA GGGGAGGATA TCCGTCCGAA TTATGTTACT TTGGTTAGTG TTCTTCCTGC GATTTCACGG CTTGGGTCGT TAGAGTTAGG AGAATGGTTG CATTTGTATG CTGAGGATAG CGGAATTAGG ATTGATGATG TGCTTGGCTC TGCTTTGATT GATATGTACT CGAAATGTGG GATCATCGAG AAAGCGATTA GGGTGTTTGA GAGATTACCT CGAGAGAACG TGATTACTTG GAGTGCGATG ATAAACGGGT TTGCTATACA CGGCCAGGCA GGTGATGCTA TTGACTGTTT TTGTAAAATG AGGCAGGCGG GAGTTCGGCC TAGCGATGTT GCCTACATTA GTCTCTTGAC TGCTTGTAGC CATGCTGGTT TGGTAGAAGA AGGAAGGAGA TATTTCAGTC AAATGGTGAG TGTAGATGGT TTAGAGCCTA GGATTGAACA CTACGGGTGT ATGGTTGATC TATTGGGTCG TTCGGGTCTT CTTGATGAGG CTGAGGAGTT TATACTTAAT ATGCCTATAA AACCAGATGA TGTTATATGG AAAGCACTTT TGGGTGCTTG CAGAATGCAC GGAAATGTCG AGATGGGCAA GCGTGTGGCC AACATTCTGA TGGATATGGT TCCTCATGAC AGTGGAGCTT ATGTTGCTCT CTCAAACATG TATGCATCTC AAGGAAACTG GTCAGAGGTT TCAGAGATGA GGCTGAGAAT GAAGGAGATG GATATAAGAA AAGATCCCGG GTGTAGTTGG ATCGACATTG ATGGCGTGCT TCACGAGTTT CTTGTGGAAG ATGATTCTCA CCCAAGAGCC AAAGAAATCA ACTCAATGCT CGTAGAAATC TCAGACAAAC TGAGACTAGC CGGGTATAGA CCAATCACCA CACAGGTTTT GTTAAACTTG GAGGAAGAGG ATAAAGAAAA CGCACTTCAT TATCACAGCG AGAAGATGGC TACTGCGTTT GGGTTGATAA GCACGAGCCC TGGCAAACCA ATACGCATTG TTAAGAACCT ACGCATCTGT GAGGATTGTC ATTCGTCCAT CAAACTCATC TCCAAAGTTT ACAAGAGAAA GATAACGGTA CGAGACCGGA AACGTTTTCA CCATTTCCAA GATGGCTCAT GCTCGTGCAT GGATTATTGG TGAAAGTAAA CATAAA |
| Length | 1946 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 11672578.. 11674523 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G48910.1 |
| Description | Pentatricopeptide repeat (PPR) superfamily protein |
| TAIR curator summary | Encodes LPA66, a chloroplast protein of the pentatricopeptide repeat family. In lpa66 mutants, editing of psbF that converts serine to phenylalanine is specifically impaired. lpa66 mutants also display a high chlorophyll fluorescence phenotype. |
| Alias | [LPA66][LOW PSII ACCUMULATION 66] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 28.4077 |
Ahg944878 | CemA-like proton extrusion protein-related |
| 28.9828 |
Ahg490970 | Protein of unknown function (DUF1195) |
| 29.5296 |
Ahg494320 | pentatricopeptide (PPR) repeat-containing protein |
| 31.6228 |
Ahg929218 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 36.7151 |
Ahg939856 | Protein of unknown function (DUF668) |
| 43.4741 |
Ahg919901 | Pentatricopeptide repeat (PPR) superfamily protein |
| 43.589 |
Ahg911648 | |
| 44.0908 |
Ahg918952 | tetratricopeptide repeat (TPR)-containing protein |
| 44.9444 |
Ahg489651 | |
| 47.3286 |
Ahg893696 | zinc finger (Ran-binding) family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|