| Annotation |
|---|
| Description | jgi|Araly1|905145|Al_scaffold_0003_2273 |
| Sequence |
ATGAGTAGTA GTAATGACGT CATTTTCCGG TCGAAATTGC CGGATATTTA TATCCCTAAC CACCTACCAC TCCACGACTA CATCTTCGAA AACATCTCTG AGTTCGCCGC TAAACCATGT TTGATCAACG GTCCCACCGG CGAGGTATAC ACCTACGCCG ACGTACACGC CATATCGCGG AAACTCGCCG CCGGTCTTCA AATAGTCGGC GTGAACCAAC ACGACGTCGT AATGCTCCTC CTCCCGAACT CTCCAGAAGT AGTCCTCACT TTCCTCGCAG CTTCACTCAT CGGCGCAATC ACCACTTCAG CGAACCCGTT CTTCACTCCG GCGGAGATCT CTAAACAAGC CAAAGCCTCC GCCGCGAAAC TCATCGTCAC TCAATCTCGT TACTTCGATA AAATCAAGAA CCTCCAAAAC GACGGCGTCT TGATCGTCAC CACCGACTCC GACGTCATCC CCGAAAACTG CCTCCGCTTC TCCGAGTTGA CTCAGTCCGG CGACCTCCGA GTCAACTCCG AGATTTCGCC AGACGACGTC GTGGCGCTTC CTTTCTCCTC TGGCACGACG GGTCTGCCCA AGGGAGTGAT GCTAACACAT AAAGGTCTCG TCACGAGCGT GGCGCAGCAA GTCGACGGCG AGAACCCAAA TCTTTACTTC AACAGAGACG ACGTGATCCT CTGTGTCTTG CCTATGTTCC ATATCTACGC TCTTAACTCC ATCATGCTCT GTAGTCTCAG AGTCGGTGCC ACGATCTTGA TAATGCCTAA ATTCGAGATC ACTCTCTTGT TAGAGCAGAT ACAAAGGTGT AAAGTCACGG TGGCTATGGT CGTGCCACCG ATCGTTTTAG CTATTGCAAA GTCGCCGGAG ACGGAGAAGT ATGATCTGAG TTCGGTTAGG ATGGTTAAGT CTGGAGCAGC TCCTCTTGGT AAAGAACTTG AAGATGCTAT TAGTGCTAAG TTTCCTAACG CCAAGCTTGG TCAGGGCTAT GGGATGACAG AAGCGGGTCC GGTGCTAGCA ATGTCGTTAG GGTTTGCTAA AGAGCCGTTT CCAGTGAAAT CAGGAGCATG TGGTACAGTG GTGAGGAACG CCGAGATGAA GATACTTGAT CCAGACACCG GAGATTCCTT GCCTAGGAAT CAAGCCGGCG AAATCTGCAT TCGTGGCAAC CAAATCATGA AAGGCTATCT CAATGATCCG GTGGCTACCG CATCGACGAT CGATAAAGAC GGTTGGCTTC ACACAGGAGA CGTTGGATTC ATCGATGACG ACGACGAGCT TTTCATTGTC GATAGATTGA AAGAACTCAT CAAGTACAAA GGATTTCAAG TGGCTCCAGC TGAGCTAGAG TCTCTCCTCA TAGGTCACCC TGAAATCAAT GATGTTGCTG TCGTCGCAAT GAAAGAAGAA GATGCTGGTG AGGTTCCTGT GGCGTTTGTG GTGAGAACGA AAGAGTCGAA TATATCCGAA GATGAAATCA AGGAATTCGT GTCAAAACAG GTTGTGTTTT ATAAGAGGAT CAATAAAGTG TTCTTCACTG ACTCTATTCC AAAAGCTCCA TCAGGGAAGA TATTGAGGAA GGATCTAAGA GCAAGACTAG CAAATGGATT AATGAACTAG |
| Length | 1620 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 8852944.. 8855668 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G21240.1 |
| Description | 4-coumarate:CoA ligase 2 |
| TAIR curator summary | encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate. |
| Alias | [4CL2][AT4CL2][4-coumarate:CoA ligase 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 7.34847 |
Ahg495603 | O-Glycosyl hydrolases family 17 protein |
| 9.16515 |
Ahg928723 | phenylalanine ammonia-lyase 4 |
| 18.4391 |
Ahg902317 | RmlC-like cupins superfamily protein |
| 20.2978 |
Ahg488138 | jasmonate-zim-domain protein 10 |
| 21.9089 |
Ahg922252 | Amino acid permease family protein |
| 27.2764 |
Ahg488925 | nucleoporin-related |
| 28.3549 |
Ahg488394 | UDP-glucose 6-dehydrogenase family protein |
| 33.7639 |
Ahg480719 | Peroxidase superfamily protein |
| 34.641 |
Ahg487769 | hydroxyproline-rich glycoprotein family protein |
| 38.5746 |
Ahg329707 | potassium channel in Arabidopsis thaliana 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|