| Annotation |
|---|
| Description | jgi|Araly1|919563|scaffold_100844.1 |
| Sequence |
ACTGCAATTG CACGGCGGTA ATGGCTTCGG TTCCGCCTGA AAACGGCGTG GACGGAGATG ACGAAAGAGA GGAAGAAGAA GAAGAGGAGG AGGAGGAAGA AGAAGAAGAA GAGAATGGAG ATGAGGCTGA GGAGGAGCCA CGCCTGAAAT ATCAGCGGAT GGGTGGCAAC GTGCCTACGT TGCTATCTAA CGACGCTGCT TCCTGCATCG CTGTTGCTGC AAGGATGATC GCGCTTGGTA CGCACGACGG AACCGTGCAT ATCCTCGATT TCTTGGGGAA TCAGGTTAAA GAATTTCGTT CCCACACTGC TCCGGTTAAT GACCTCAACT TTGACACAGA GGGAGAGTAT ATCGGAAGCT GTTCAGATGA TGGGTCTGTT GTTATAAATA GCCTTTTCAC TGATGATGAG AAGATGAAAT TTGATTATTA TCGTCCCATG AAGGCCATTT CCTTGGATCC AGATTATACG AAAAAGCAAT CTAAGAGATT TGTAGCTGGT GGCTTGGCTG GTCACTTGTA TATGAACTCC AAGAAGTGGT TCGGTAATAA AGACCAGGTG CTGCATTCTG GGGAAGGTCC AATCCATTCT GTGAAATGGA GAGGAAGTCT CATCGCCTGG GCTAATGATG TTGGTGTTAA GGTGTATGAT ACAGCCAAAG ATCAGCGTGT TACATTTATT GAAAAACCGC GAGGAAGCCC CAGGCCTGAG GCGTTACTTC CCCACTTGGT TTGGCAGGAT GACACTCTTC TTGTGATTGG TTGGGGGACA TCAGTTAAAA TTGCTTCGAT TAAATCAGAC CAGCAACAAC CTGGAACTTT TAGGCAGATT CAGATGTCTA GTCTAACCCA AGTAGATATT GTGGCATCTT TCCAAACCAG CTATTACATT TCAGGGATTG CTCCCTTTGG TGATTCTCTA GTTATTCTTG CTTATATACC CATTGAAGGA GATGGTGAGA AGGAATTTAG CAGCACCACT ACTCTATCGC GTCAGGGAAA TGCCCAGAGA CCTGAAATTC GCATTGTATC ATGGAACAAT GATGAACTTA CAATGGATGC TCTTCCTGTA CACGGCTTTG AGCATTACAA GGCGAAAGAC TATTCCCTTG CTCATGCTCC TTTCCCAGGT AGTAGCTATG CTGGGGGACA GTGGGCAGCT GGTGATGAAC CACTGTACTA TATTGTTTCT CCAAAGGATG TTGTGATTGC CAAACCCAGG GATGCGGAAG ATCACATTAA CTGGCTTTTG CAACATGGAT TCCACGAGAA AGCCCTAGCA GCTGTTGAGG CTAGTGAAGG ACGAACCGAA CTAATTGATA AGGTGGGAGC TGGGTATCTT GATCATTTGA TTGTGGAAAG AAAATATGCT GAAGCAGCAT CTTTATGCCC CAAATTGTTA CGAGGATCTG CTTCAGCCTG GGAGAGGTGG GTTTTCCATT TTGCTCAACT ACGCCAGCTT CCTGTTCTTG TCCCATATAT GCCTACGGAT AACCCAAGGC TTAAGGATAC TGTGTATGAG GTTGCTCTTG TTGCACTGGC AACCAATCCC TCATACCACA AGGAGCTTTT GTCAGCTGTT AAATCTTGGC CACGTTCAGT ATATTCTGCT TTGACTGTTA TCTCAGCAAT AGAGCCTCAA CTGAACACAT CTTCAATGAC AGATGCCCTC AAAGAGGCGC TGGCAGAGCT GTATGTAATT GATGGACAGT ATCAGAAGGC CTTCTCCCTA TATGCTGATC TTCTCAAACC AGAAGTGTTT GACTTCATTG AGAAATACAG TTTGCATGAG GCGATTCGCG GAAAGGTGGT CCAGTTAATG TTGCTTGATT GCAAGCGTGC CACTGTTTTA TTTATCCAAA ATAGGGATTT GATTCCTCCA TCTGAAGTTG TTCCACAACT TCTGAAAGCT GCCAAAAATC CACAACTTCT GAAAGCTGGC AAAAAATGTG ATTCAAGATA TTACTTGTAC TTATATCTGC ATGCATTATT TGAAGCCAGT CATGATACTG GGAAGGATTT TCATGATATG CAGGTAGAAC TCTATGCAGA ATACGATACT AAGATGCTAC TTCCGTTCCT ACGTAGCAGT CAACATTACA AGTTAGAAAA GGCATATGAG CTTTGTGTCA AGAAAGATTT TTTAAGAGAG CAAGTGTTTG TCCTGGGAAG GATGGGAAAT GCAAAACAAG CTCTTGCAGT CATCATAAAT AAACTGGGGG ATATAGAAGA GGCTGTGGAA TTTGTGTCCA TGCAGCACGA TGATGATCTA TGGGAAGAGC TGATTAAACA ATGTCTAAAC AAGCCTGAGA TGGTGGGCTT GCTGTTGGAG CACACAGTTG GCAATCTCGA CCCTCTTTAC ATTGTAAATA TGGTCCCAAA TGGCTTGGAA ATACCTCGAT TAAGGGATCG ATTGGTCAAA ATCGTTACAG ATTACAGAAC TGAGACATCT CTTAGACACG GTTGCAATGA CATTCTCAAG ACGGATATTG TTAATCTTCT CGTCAAGTGC TTCAACGAGG CCAGGCGCGG GGTCTGCCTA AGCCATGAAG ACGACGATTC CCGTGCGAAG AGAGAAGACA ATAATCGCTC AATCTCGCAG AGAATGGTAG TAGATAAATC TTTGAGCATA AAGATGACAG AGGTGAAGTC GAAGACACGG GGGGACACAC GGTGTTGTAT GTGCTTCGAC CCGGTCTCGA TAAGAGGGGA CACCGTAGTG GTCTTCTTCT GCTGCCATGC TTACCACGAG ACGTGCCTCA TGGATGCTGC CTTCAGTAAC AGCAATAACA AGACAACGAA AGGTTCTTCG GGGTATGAAT ACAGCTACGA TAATGGTGTG GATGAGGAGG AAGAGGATGA GGAAGAAGAT GAGGATGGTG ACGGAGACAG ACCTGGGCGG TCGCGTTTAC GGTGCATATT ATGTACTACT GCCGCCGCTG CGTCCGCTCG GTAGCGACCC CTTTTGTGCA TGTGTT |
| Length | 2976 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 2907274.. 2913044 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G08190.1 |
| Description | vacuolar protein sorting 41 |
| TAIR curator summary | Might be involved in protein sorting to the vacuole. |
| Alias | [ATVAM2][ATVPS41][VAM2][VPS41][ZIP2][VACUOLAR PROTEIN SORTING 41][vacuolar protein sorting 41][ZIGZAG SUPPRESSOR 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.16441 |
Ahg480776 | diacylglycerol kinase 3 |
| 18 |
Ahg490646 | Calcium-binding EF-hand family protein |
| 22.3159 |
Ahg479603 | Ethylene insensitive 3 family protein |
| 23.6432 |
Ahg929041 | serine acetyltransferase 2;2 |
| 30.1993 |
Ahg942891 | global transcription factor C |
| 30.7246 |
Ahg488346 | SIN3-like 2 |
| 31.8904 |
Ahg474229 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| 36.647 |
Ahg904752 | Protein kinase superfamily protein |
| 56.4358 |
Ahg930547 | |
| 64.9923 |
Ahg487697 | transducin family protein / WD-40 repeat family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|