| Annotation |
|---|
| Description | jgi|Araly1|927617|scaffold_300074.1 |
| Sequence |
TTCCAATAAC CTAATCGAAT AATGGAACTC ACTGATTCTA CAACCGAGCA ACTCGGAGAC ACTCGGACCG CCGCTCTCAA GGAAGAGAAT CGCTCCTTTC TCGGTATCGA TCTCAACGAA ATCCCTACCG GCCCTACTCT CGGCGGTGGT TGCACCGGCG GTCAGGACGA CGACGGCGAA TATGAACCTG TTGAAGTTGT TAGGTCAATT CACGATAACC CGGACCCAGC GCCTGGAGCC CCTGCGGAGG TTCCTGAACC GGATCGGGAT GCTTCGTGCG GCGCGTGTGG AAGACCAGAG TCTATGGAGC TCGTTGTAGT CTGCGATGCT TGTGAGCGAG GGTTTCATCT GTCTTGTGTT AACGATGGAG TTGAGGCGGC TCCTTCCGCC GATTGGATGT GCAGCGACTG TGTTACTGGC GGCGAGAGGA GTAAACTGTG GCCGTTGGGG GTGAAGTCCA AGCTCATTCT GGATATGAAC GCCTCGCCGC CCAGCGATGC AGAGGGATAC GGAGGCGAGG AGACGTCTGA TTCGAGAAAG CATATGCTCG CCAGCAGCTC TTGCATGGGA AACTCTTTTG ATTATGCAAT GATGCATTCA AGCTTCTCAA GTCCTGGTAG AGGACTTGCT AGTCTCGAAG CTTCAGGGTT AATAGCTCGT AATACCAAAA TGAGTATGGA TGCATTGGCT ACACATAATC TAGGTTTTGG ATTCCCATTA AGCCTGAACA ATAGTAGTTT GCCCATGAGA TTTCCATCCT TGGATCCAAG TGAGTTGTTT CTGCAAAATC TCAGGCATTT CATATCTGAA AGGCATGGAG TATTGGAAGA TGGTTGGCGT GTCGAATTTA AACAACCTTT AAATGGTTAT CAGTTATGTG CAGTGTATTG TGCTCCGAAT GGAAAAACAT TTAGTTCAAT ACAAGATGTT GCTTGTTATC TGGGCTTGGC AGTTAATGGT AACTACAGCT GTATGGATGC TGACATCAGG AATGAGAGTT CTCTTCTTCA AGAAAGATTG CATATGCCCA AGAGAAGAAA GACATCAAGA TGGCCAAACA ATGGTTTCCC TGAGCAAAAG GGTAGTTCAG TCAGTGCCCA ACTCAGGCGT TTTCCATTCA ATGGTCAGAC AATGTTTCCT TTTGTTGTTA AATCTGGTAC TCATCTCCAG GCTGGTGATT CTCTTAACTC TGGAAATAAT GGATGCGGTT GTGAGGAAGC TAATAATGGA CTTCCGATGC AGTATGAAGA TTTCTTTGTT CTGTCGCTTG GACGAATTGA CATAAGACAG TCTTACCATA ATGTCAACGT AATTTATCCA ATAGGATATA AGTCCTGCTG GCATGATAAG ATCACGGGGT CTCTATTTAC ATGTGAAGTA TCTGATGGCA CTTCTGGTCC TGTTTTCAAG GTTACACGGT CACCATGTTC TAAATCATTT ATTCCAGTTG GATCAACTGT CTTCTCCTGC CCAAAGATTG ATGAAATGGT GGAACAGAAC ATTGACAAAC AAAGTGATCG TAGAGACAGT ACTCTAGAGC ATGATGATGA CGCTAATATT GAGACCCTTC TTTCGGATCA CAGCCCACCT CTTGGAGATG ATATATTGTC TTGTTTACGT GAGAAGAATT TCTCCAAGAC ATTCAATTGC CTGCGCTCAG AGGTTGGTTC TTCTCAAGTA GAATCTGATA AAGTTTTATC CTATAATCAG GACCGTGGGG TTGAAATTGG TGAAATTGTT GTGGAAGAAG ATTCACTATC TGCTGCATGG AATAAGGTGT CTCAAAAACT TGTTGATGCA TGCTCCATTG TAATGAAGCA GAAGGGTACC TTGAATTTCC TTTGCAAGCA TGTTGACAGA GAAACAAGGG AAATCAACTG GGATACCATG AATGAGAAAG ACAATGTATT TTTATCGTTG TCTAGATTTT GCTGTACTTT GGGTCCTCAC AGTGTTACGT GTGGTGAAAA GGATAAAAGT GAGATTGCAA CTCTAGTTGA TGCTTTGTCA AGGTGGCTGG ATCAAAACAG ATTTGGACTT GATGCAGATT TTGTACAGGA AATGATTGAA CATATGCCTG GTGCCGAATC ATGTACAAAT TATAGGACTC TGAAGAGTAG AAGTTCTTCT TCTGTTCCTG TAACTGTAGC GGAAGGAGCG CTAGTTGTCA AACCAAAAGG TGGGGAAAAT GTCAAGGAAG AAGTTTTCGG TGAGATTTCT CGGAAATCCA AGAAGCCTAA ACTAAATGGA GATTTTGGTG TCAGAAATCT ACACCCTCCT CCTGGGAGGC CAATGTGTTT GAGGCTTCCT CCTGGGCTTG TTGGTGACTT CCTTCAGGTA TCTGAAGTGT TCTGGCGTTT CCATGAAATT TTGGGTTTTG AAGAGGCTTT CTCATCTGAG AAGCTTGAAC AGGAGCTTAT CAATCCAGTG TTTGATGGTT TGTTTCTTGA TAAACCTGGG AAAGATGATA AGAGAAGTGA GATGAACTTT ACTAATAAGG ATTGTTCCGG TACTGAATTT TTTTCTTTGT TCGATGAATC TCGCCAACCT TTTCCTGCTA AAAATACCTC TGCTTCTGTA CTAAAGGAGA CAAAGGCAGA GGATTCTTCT GATTTTGCGA TTTCATATTC CTCTCATGGG CCGTGTGTGG GTGCACTTCT AACAAGGACT CACATTTCGC TTCTGCAAGT GCTAATATGT GAGCTGCAAT CCAAGGTAGC TGCATTTGTT GATCCAAACT TTGATTCTGG AGAGTCGAGA TCCAGACGAG GACGGAAAAA GGATGACAGT ACACTTTCTG CTAAAAGAAA CAAGCTGCAT ATGCTTCCTG TTAATGAGTT CACTTGGCCC GAATTGGCCC GTAGGTACAT CTTGTCTCTT TTATCAATGG ATGGGAACCT CGAATCAGCA GAGATTTCTG CGCGTGAAAG TGGTAAGGTA TTCCGTTGCT TACAAGGGGA TGGTGGTTTG CTTTGCGGCT CGCTTACAGG AGTGGCTGGG ATGGAAGCAG ATTCAATGTT ACTTGCAGAG GCTATTAAGA AAATATCTGG TTCTTTGACA AGCGAAAATG ATGTTCTTTC TGTGGAAGAT GATGATTCCG ACGGCCTTGA TGCTACTGAG ACAAACACTT GCAATGGTGA TATTCCAGAG TGGGCACAGG TTCTAGAACC TGTGAAAAAG CTTCCAACAA ATGTTGGGAC TAGAATCAGA AAGTGTGTCT ATGAAGCTTT AGAGAGAAAT CCACCAGAGT GGGCAAAGAA GATATTGGAG CATTCCATCA GTAAAGAAGT ATATAAAGGC AATGCATCAG GACCAACAAA GAAAGCTGTC CTCTCATTGC TAGCGGATGT TCGAGGTGGA GATTTGGTGC AGAGGTCTGT TAAAGGAACC AAAAAGCGAA CATCTATAGG TGTATCTGAT GTCATTATGA AGAAATGCCG TGCTGTATTG CGTGGTGTTG CAGCCGCAGA CGAAGATAAA GTCTTTTGCA CTTTGCTGGG GCGAAAGTTG CTGAATTCCA GTGATAATGA TGATGACGGG CTCCTGGGAA CACCTGCAAT GGTTTCGCGT CCCTTGGACT TCAGAACTAT TGATTTGAGG TTGGCTGCTG GTGCATATGA CGGATCAACT GAAGCTTTTC TTGAGGATGT TCTTGAGCTG TGGAGTAGTA TACGTGTTAT GTATGCAGAT CAGCCCGATT GTGTGGAACT GGTTGCAACA TTGTCTGAAA AATTCAAGTC GTTATATGAG GCTGAGGTTC TACCACTCGT TCAGAAACTT ATGGAGTACA GGAAATTGGA ATGCCTAAGT GCAGAGATGA AGAAAGAAAT TAAGGACATA GTTGTTTCAG TAAATAAGCT TCCCAAGGCC CCGTGGGATG AGGGGGTATG TAAAGTATGT GGTGTTGACA AAGATGATGA CAGTGTTCTC TTGTGTGATA CATGCGATGC TGAGTATCAC ACATATTGTT TAAATCCACC TCTTATTCGA ATTCCTGATG GAAATTGGTA TTGTCCATCT TGTGTCATTG CCAAACGCAT GGCTCAAGAG GCTTTGGAAT CTTACAAACT AGTCAGGCGG CGGAAAGGTA GAAAGTATCA GGGGCAACTC ACCCGAACTT CTATGGAAAT GACTGCTCAC CTGGCAGATG TGATGGAAGA AAAGGACTAC TGGGAGTTCA GTGCTGAGGA GAAAATCTTG CTGCTCAAGC TTCTATGCGA TGAACTGCTT AGTTCATCTC TTGTCCATCA ACACCTTGAG CAGTGTGCCG AAGCAATAAT TGAAATGCAG CAGAAGTTAC GCTCTCTTTC CTCAGAATGG AAAAATGCAA AAATGCGCCA AGAATTCCTG ACGGCTAAAC TCGCAAAGGT TGAACCGAGT ATTCTGAAGG AAGTGGGTGA ACCACATAAT TCAGGTCACT TTGCAGACCA AATGGGATGT GATCAACGAC CACAGGAGGG CGTTGGAGAC GGAGTTACTC ATGATGATTC CTCTACTGCA TATCTTAACA AGAATCAAGG TAAAGCTCCG CTTGAAACCG ATTCTCAACC TGGAGAGTTT CAAGATTCTC AACCTGGAGA GTCGCATGTT AATTTCGAGA GCAAAATTTC CTCCCCAGAA ACAATTACAT CCCCTGGAAG GCATGAGAAA CCTATAGCAG ATACCTCTCC TCATGTAACG GATAATCCGT CTTTTGAAAA AGATACCTCA GAGACCTTGC ACAAGTCAGT TGGAAGGAAT CATGAAACAC ATTCACTAAA TTCCAATGCA GTAGAATTCC CGACAGCTCA TGATGCATCT TCTCAGGCTT CCCAAGAGTT GCAGGCTTGT CTACAGGATT TGAATGCCAC TAGTCATGAA ATTCAGAATC TGCAGCAATC AATTAGAAGC ATAGAATCAC AGCTTCTAAA GCAATCTATA CGGAGAGACT TTCTGGGAAA CGATGCTAGT GGTCGTTTAT ATTGGGGTTG CTGCTTCCCA GACGAAAATC CTCGTATATT GGTTGATGGA AGCATATCTT TGCAGAAACC TGTTCAAGCC GATTTGATGG GTTCAAAAGT CCCCTCTCCG TTTCTCCATG CCGTTGACCA TGGAAGACTA AGGCTTTCAC CCTGGACTTA TTATGAAACC GAAACCGAGA TCAGCGAGCT TGTCCAATGG CTTCATGATG ATGATCTGAA AGAAAGAGAC CTGAGAGAGT CTATTTTGTG CTGGAAAAGG TTACGATTTG GGGACGTCCA AAAGGAAAAG AAACAAGCTC AGAATTTATC TGCTCCGATA TTGGCTAGGG GTCTTGAGAC CAAGGCTGCC ATGTCAATGG AGAAGAAATA TGGTCCATGC ATCAAACTAG AGACGGAAAC CTTAAAAAAA CGGGGGAAGA AGACAAAGGT TTCAGAGCGA GAGAAAGTGT GTAGATGCGA GTGCTTGGAA TCCATTTTGC CATCCATGAT TCACTGCCTC ATATGCCATA AAACATTCGC AAGTGATGAT GAGTTTGAGG AGCACACTGA GAGTAAGTGT ATTCCTTATT CATTAGCAAC TGAAGAAAGC AAGGAAATCT CTGATTCTTC AAAAGCAAAA GAAAGTCTGA AATCTGATTA TCTTAATGTA AAGTCTAGCG CCGGCAAAGC TGTAGGTGAA ATATCCAATG TGTCTGAACT TGATTCTGGG TTGATAAGAT ATCAAGAAGA AGAATCTATT TCCCCATACC ATTTTGAGGA GATCTGCTCC AAGTTTGTGA CAAAGGATTC CAACAGAGAT TTGGTTAAAG AAATTGGTCT GATCGGTTCA AATGGCATTC CAACATTTCT TCCAGCGTCA TCTACTCACC ATAACGACTC AGTGCTCATC AATGCCAATC CCAATAAGCT AGATGGTGGT GATTCAGGGG ACCAGGTCAT TTTTGCTGGT CCTGAAACCA ATGTTGAAGG CTTAAATTCT GAATCTAACT TGTCATTCGA TGGATCTGTC ACAGACAATC ATGGCGGTCC ACTGAATAAA CTGACCGGAC TGGGTTTTGG CTTCTCAGAG CAAAAGAATA AGAAATCTTC AGGTAGTGGG CTGAAAAGCT GCTGTGTGGT TCCACAGGCT GCTTTGAAAC GAATAACTGG CAAAGCTTTG CCGGTTTTCA GGTTCCTTAA AACCAACTTA CTTGATATGG ATGTGGCACT GCCTGAAGAA GCTTTAAGAC CATCGAAATC TCATCCAGAC CGTAGAAGAG CTTGGCGTGT ATTTGTGAAA TCCGCGCAAA GCATATACGA GTTGGTTCAG GCAACATTTG TGGTAGAAGA TATGATTAAG ACAGAGTACT TGAAAAATGA ATGGTGGTAC TGGTCTTCTC TTTCAGCGGC TGCTAAAATA TCTACTCTCT CAGCGTTATC CGTTCGTATC TTCTCCCTCG ATGCAGCTAT CATTTATGAT AAACCCATAA CCCCATCAGA TCATAACGAT GAAACTAAGC CGATCATCAG CTTACCAGAC CAGAAGTCAC AGCCGGTTTC AGATTCACAA GAAAAAAGCA GCAGAGTAAA CAGAAGATCT GGTAAGAAGA GGAAAGAACC CGAGGGATCA TAGTTATTTA TTAAAAACCA CTG |
| Length | 6593 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 220941.. 229599 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G01460.1 |
| Description | methyl-CPG-binding domain 9 |
| TAIR curator summary | Encodes a protein with a methyl-CpG-binding domain. Has sequence similarity to human MBD proteins. Involved in the modification of the FLC chromatin acetylation state to affect FLC expression. Mutants show an early flowering, and enhanced shoot branching phenotypes. |
| Alias | [ATMBD9][MBD9][methyl-CPG-binding domain 9] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.16441 |
Ahg329795 | G2484-1 protein |
| 6.16441 |
Ahg919234 | |
| 13.7113 |
Ahg491448 | Sec23/Sec24 protein transport family protein |
| 15.6205 |
Ahg479112 | Calcium-dependent lipid-binding (CaLB domain) family protein |
| 15.9687 |
Ahg928168 | embryo defective 2016 |
| 16.2481 |
Ahg487657 | Tudor/PWWP/MBT domain-containing protein |
| 24.7386 |
Ahg478288 | Tudor/PWWP/MBT superfamily protein |
| 25.2389 |
Ahg489045 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| 34.8712 |
Ahg938971 | RNA binding |
| 35.4965 |
Ahg471138 | glutamine-rich protein 23 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|