| Annotation |
|---|
| Description | jgi|Araly1|928150|scaffold_300607.1 |
| Sequence |
CTTTGAGAAA CCCCTAACTC TTGCTCCTCT CTTCCTGGCG ATCTCTCTCT CCGATTTGGG TATTGAAATG GCAACTCCTA TGGTTGAAGA TACGTCAAGC TTCGAAGAGG ATCAGCTCGC TTCCATGTCC ACCGAAGATA TCACTAGAGC TACTCGTCTC CTCGATAACG AGATTCGAAT TCTCAAGGAA GACGCACAGA GAACAAATCT AGAATGTGAT TCTTACAAGG AGAAGATAAA GGAGAATCAG GAGAAGATTA AACTCAACAA GCAGCTGCCT TACTTGGTTG GCAACATTGT GGAGATTTTG GAGATGAATC CTGAAGATGA TGCTGAGGAA GATGGTGCAA ATATTGATCT TGACTCTCAA CGGAAAGGAA AATGTGTTGT GTTGAAAACG TCTACACGGC AGACCATCTT TCTACCAGTG GTTGGACTCG TGGATCCTGA TAGTTTGAAA CCTGGTGACT TGGTTGGAGT TAATAAAGAT AGCTACTTGA TTTTGGATAC CTTGCCATCC GAGTATGACT CTAGGGTTAA AGCCATGGAG GTCGATGAAA AACCAACTGA AGATTACAAT GACATCGGAG GACTAGAGAA GCAGATCCAA GAGCTTGTTG AGGCAATTGT GCTTCCAATG ACACACAAGG AACGTTTTGA GAAGCTGGGT GTTCGTCCAC CAAAGGGGGT GCTCTTATAT GGTCCTCCAG GGACTGGTAA AACTTTGATG GCTCGTGCCT GCGCAGCACA GACCAATGCC ACCTTCCTTA AATTGGCAGG CCCTCAATTG GTCCAGATGT TCATTGGAGA CGGAGCAAAG CTTGTCCGCG ATGCCTTTCA ACTTGCCAAA GAGAAAGCTC CGTGCATTAT CTTCATAGAT GAAATCGATG CCATCGGTAC AAAGCGTTTC GACAGTGAAG TCAGCGGAGA CAGGGAGGTG CAGAGAACTA TGTTGGAGTT GCTCAATCAA CTTGATGGAT TCAGCAGCGA TGAACGTATT AAGGTGATTG CAGCCACTAA CCGTGCAGAT ATTCTAGATC CAGCACTCAT GCGTTCTGGT AGACTAGACA GAAAGATTGA GTTCCCGCAC CCAACTGAAG AAGCCAGAGC CAGAATCTTG CAGATTCACT CAAGGAAGAT GAATGTCCAC CCAGACGTCA ACTTTGAGGA GCTTGCAAGA TCAACAGATG ATTTCAATGG AGCTCAGCTG AAAGCAGTGT GTGTAGAGGC AGGCATGCTA GCGCTTCGCC GTGATGCCAC AGAGGTGAAC CATGAAGACT TCAATGAAGG TATCATCCAA GTCCAGGCCA AGAAGAAAGC AAGCTTGAAC TACTATGCCT GATCCCTCTG TCATCATTTA TATTTCT |
| Length | 1367 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 2003214.. 2005773 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G05530.1 |
| Description | regulatory particle triple-A ATPase 5A |
| TAIR curator summary | Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype. |
| Alias | [ATS6A.2][RPT5A][regulatory particle triple-A ATPase 5A] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1.41421 |
Ahg481580 | 20S proteasome alpha subunit G1 |
| 3.31662 |
Ahg473945 | calcium-dependent lipid-binding family protein |
| 6.245 |
Ahg496924 | succinate dehydrogenase 1-1 |
| 8.12404 |
Ahg494670 | Lactate/malate dehydrogenase family protein |
| 9.38083 |
Ahg477265 | DnaJ / Sec63 Brl domains-containing protein |
| 9.48683 |
Ahg478699 | Cwf15 / Cwc15 cell cycle control family protein |
| 9.48683 |
Ahg476977 | F-box family protein |
| 10.0995 |
Ahg488386 | U-box domain-containing protein |
| 10.8167 |
Ahg470503 | Helicase protein with RING/U-box domain |
| 10.9545 |
Ahg940290 | mRNA splicing factor, thioredoxin-like U5 snRNP |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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