| Annotation |
|---|
| Description | jgi|Araly1|929867|scaffold_302324.1 |
| Sequence |
TGAGGCTACT ACTGCTGGAA GATGGCTAAT AACCATCAGT ATCCTGGCAT TCAGCCATTC CAGCATCCTA ATGCTAGCTC CATAGATTTA CCCCGAGGCT TTGCTCCACC CATGAACTTT CAGTTTCATC CTACCATTCA AGCTCCTCAG TCTGAGCAAG TTGCTCGATT GTCTTCTCAG AACTTTCAAT GTGTTGGCAG AGGTGGCACA GTATTGAACA TTGGATATCC ACCTCAATCT TATGCACCTC AGTTATTACA GTCAATGCAC CATTCACATG AAAGACCCAG CCAATTAAAT CAGGTGCAAG TGCAACATGT GCCACTTGGA CCCCCAACTC TAGTTTCACA GCCAAATGTG TCAATTGCTT CTGGTACCTC CTTGCATCAG CCTTATGTAC AAACTCCAGA TATTAGTATG CCTGGCTTTG GTGGCCCTAG GGCACTCTTT TCTTATCCGA GTGCCACATC TTACGAAGGT TCGAGGGCAC CACCTCAAGT CACTGGACCA AGCAGTCATA GTCAGGCACA ACATAGAGCA TCTATCAGCC AGACTACTGC ACAATCTTCT ATCCTGAATC CGACATTTGA ACAACCAAAG GAAGCTTTTA CTAAACCTAT ACCTTCTCAA GAGGCTCTAA CAGATTGGGT TGAGCATACC TCTGCAGATG GAAGGAAATA TTTTTTCAAC AAGAGAACAA AGAAGTCCAC TTGGGAGAAG CCTGTTGAGT TGATGACTCT TTTTGAGAGA GCAGATGCAA GAACTGACTG GAAAGAACAT TCAAGTCCTG ATGGAAGAAA GTATTACTAC AATAAGATTA CGAAGCAATC AACATGGACA ATGCCTGAAG AAATGAAGAT TGCGCGTGAA CAAGCAGAAA AAGCATCTGT TCAAGGGCCT CATGCAGAAG GCATTATTAA TGTTTCTAAG GTGCTGACTC GTTCTGATAC TGCATCAACT GCAGCTCCGA CTAGTCTACC AAGCCAAACT TCAACCTCTG ATGTCAGTGA GAAACTAGCT CTTACTTCTG ATTGGAAGCA GCCAGCTTCA GTTCCTGGAA GTTCTTCTCC GGTCGAAAAT GTTGATCGAG TTCAGATGAT TGCAGATGAA ACATCACAAT TGTGTGATAC TTCAGAAACC GATGGTCCTT CTGTCCCTCA AGGTAGTGGG ACTGGGCCAG AAGAAAGCCA AAAACCTATG GTGGAAAGTG AAAGAGTTGA GAGCCAAACG GAAGAAAAAC AAATTAATCA AGAGAATTTT TCCTTTAACA ATAAATCGGA AGCTGGGGAT GTCTTCAAAT CACTTTTGAA ATCTGCCAAT GTTGGATCTG ACTGGACATG GGAACAGGCC ATGAGAGAAA TTATTAATGA CAGAAGATAC GGTGCTCTGA GGACACTTGG AGAGCGGAAG CAAGCCTTCA ATGAGTTCTT ACTTCAAACG AAAAGAGCAG CTGAGGAGGA AAGGCTAGCC AGACAGAGAA AACGGTATGA AGATTTTAAA AGGATGTTAG AGGAATGCGT GGAACTTACT CCTTCTACTC GGTGGAGTAA GGCTGTGACA ATGTTTGAAG CCGATGAGCG TTTCAAAGCT CTTGAACGAG AAAAAGACCG TCGTAATATT TTTGAAGATC ATGTCAGTGA GCTAAAAGAG AAGGAGCGGG TGAAAGCTCT TGAGGATCGC AAGCGGAACA TAATTGAATA CCGAAGATTT TTGGAATCTT GCAATTTCAT CAAGCCTAAT AGTCAATGGC GCAAAGTTCA GGACCGCTTA GAAGTGGATG AAAGATGTTC ACGTCTTGAG AAAATTGATC AGCTAGAAAT CTTTCAGGAG TATCTGCGTG ATCTGGAGAG AGAAGAAGAG GAGAAAAAGA AGATACAAAA GGAGGAACTC AAAAAAGCAG AGCGAAAGCA TCGTGATGAG TTCCGTGGGC TGATAGAGGA ACATATTGCA ACAGGAGAGC TTACTGCCAA AACTGTATGG CGTGATTATT TAATGAAGGT CAAAGATTTA CCAGTATATT CAGCAATTGC GTCGAACTCC TCTGGAGCTA CTCCAAAAGA CTTATTTGAA GATGCTGTTG AGGATTTGAA AAAAAGGTAC CACGAGCTCA AGTCTCAGAT AAAGGATGTA TTGAAATTGA GAAAGGTAAA TTTATCCGCT GGATCAGCAT TTGATGAGTT CAAGGTCTCA ATTTCCGAGG ATATTGGTTT TCCACCTATT CCTGACGTTA GACTAAAGGT AGTCTTTGAT GATTTGCTGG AAAGGGCAAA GGAGAAGGAA GAAAAGGAAG CCAGAAAACA GACACGGCAG ACTGAAAAGT TGGTGGATAT GCTTCGCTCC TTCAAGGATA TAACTGCCTC TTCATCATGG GAGGAATCAA AACATCTTGT TGAAGGTAGT GAAAAATGCT GTACTATTGG CGATGAGAGC TTCCGGAAGC AGACATTCGA AGATTACGTT TCACTCCTCA AAGAGCAATC AAAAAGGATC AAACAGAACA AGAAGGTACC CGAGGATGTG AGAGAGGAAC ATGACAAGGG GAGAGATAAA TACGGAAGAG AGAAGGACAG AGTGCGAGAA AGAGACAGTG ATGATCATCA TAAGAAAGGT GCAGCTGGTA ATTACAACCA TGATATGAAT GATTCCCATG GAAAAGAACG TAGAAGATCA GGAAGAGATA GCCATAACCG ACATCGAGAA AGACATACTA GTGTGAAGGA AAATGACATA GACCATTTCA AAGAATCCCA AAAAGCTGGT GGTGGTCACA AGAAATCAAG ACATCAGCGA GGTTTGGTCC CCGAAGCAGA GGTTGAGGGC AGGATAAAGC GGCGTAGAAA AGAGGAAGAG AGTGAGCACA CAAAGGAAGA GGAGCTTGAA GATGGAGAAT GTGGTAGGTA TTGAAAATCG TTACACCAGG TTAATATC |
| Length | 2928 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_3: 8021223.. 8029311 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT3G19670.1 |
| Description | pre-mRNA-processing protein 40B |
| TAIR curator summary | Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold for RNA processing machineries. Ubiquitously expressed and localize to the nucleus. |
| Alias | [ATPRP40B][PRP40B][pre-mRNA-processing protein 40B] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.4641 |
Ahg475653 | LETM1-like protein |
| 5.09902 |
Ahg473467 | RING/FYVE/PHD zinc finger superfamily protein |
| 10.5357 |
Ahg475241 | U2 snRNP auxilliary factor, large subunit, splicing factor |
| 10.583 |
Ahg950590 | smr (Small MutS Related) domain-containing protein |
| 12.1244 |
Ahg487145 | Family of unknown function (DUF662) |
| 21.4942 |
Ahg323761 | gamma response gene 1 |
| 22.9783 |
Ahg476195 | MMS ZWEI homologue 2 |
| 25.4951 |
Ahg487123 | |
| 27.55 |
Ahg321074 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| 28.2843 |
Ahg943535 | MUTS homolog 6 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|